sample: Sample cells from a population
In heavywatal/rtumopp: R interface to tumopp, a tumor growth simulator in C++

sample_uniform_regions

R Documentation

Sample cells from a population

Description

Sample cells from a population

Usage

sample_uniform_regions(tbl, nsam = 2L, ncell = 10L, jitter = 0)

sample_random_regions(tbl, nsam = 2L, ncell = 10L)

sample_bulk(tbl, center = c(x = 0, y = 0, z = 0), ncell = 10L)

sim_sample_single_cell(graph, nrep = 1L, ncell = 100L, mu = 0, accel = 0)

sim_sample_biopsy(
  graph,
  population,
  nrep = 1L,
  nsam = 5L,
  ncell = 100L,
  mu = 0,
  accel = 0
)

evaluate_mrs(
  population,
  nsam,
  ncell,
  threshold = 0.05,
  sensitivity = 0.05,
  jitter = 0
)

distances_mrs(population, nsam, ncell, jitter = 0)

Arguments

`tbl`	tibble of extant cells with id, x, y, z columns
`nsam`	number of regions to sample
`ncell`	number of cells per specimen
`jitter`	amount of random variations on x and y axes
`center`	named (x, y, z) vector, list, or tibble
`graph`	igraph
`nrep`	number of replications.
`mu`	mutation rate per cell division (ignored if segsites is given)
`accel`	assumption undocumented yet
`population`	tbl
`threshold`	minimum frequency of detectable alleles
`sensitivity`	minimum allele frequency