ms: Sprinkle mutations on genealogy
In heavywatal/rtumopp: R interface to tumopp, a tumor growth simulator in C++
make_sample R Documentation
Sprinkle mutations on genealogy
Description
Sprinkle mutations on genealogy
Usage
make_sample(graph, nsam = 0L, mu = NULL, segsites = NULL)
edge_lengths(graph, mu = 0, accel = 0)
Arguments
graph
igraph
nsam
number of cells to sample
mu
mutation rate per cell division (ignored if segsites is given)
segsites
number of segregating sites
accel
assumption undocumented yet
Details
make_sample creates a genotype matrix from a given genealogy tree.
edge_lengths() calculates lengths of edges on a given genealogy tree.
heavywatal/rtumopp documentation built on April 12, 2025, 10:56 p.m.
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| make_sample | R Documentation |
Sprinkle mutations on genealogy
Description
Sprinkle mutations on genealogy
Usage
make_sample(graph, nsam = 0L, mu = NULL, segsites = NULL)
edge_lengths(graph, mu = 0, accel = 0)
Arguments
graph |
igraph |
nsam |
number of cells to sample |
mu |
mutation rate per cell division (ignored if segsites is given) |
segsites |
number of segregating sites |
accel |
assumption undocumented yet |
Details
make_sample creates a genotype matrix from a given genealogy tree.
edge_lengths() calculates lengths of edges on a given genealogy tree.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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