Man pages for heavywatal/tumorr
R interface to tumopp, a tumor growth simulator in C++
| coord | Utilities for coordinate values |
| cuboid | Binary expression of cell existence |
| demography | Functions for event history |
| dispersion | Utilities for dispersion 'summary_row()' and 'mutate_chisq()'... |
| distance | Calculate genetic distance from genealogy or VAF |
| drivers | Functions to deal with driver mutations |
| fst | Calculate F_ST from matrix |
| graph | Functions depending on igraph |
| heterogeneity | Evaluate heterogeneity |
| hex | Transform coordinates into hexagonal grid |
| morphology | Extract surface cells with mathematical morphology |
| ms | Sprinkle mutations on genealogy |
| path | Get the path to the tumopp installation. |
| plot | ggplot for frequency spectrum |
| plot-biopsy | Plot capture_rate ~ nsam of biopsy |
| plot-genealogy | Visualize cell genealogy |
| plot-rgl | 3D plotting with rgl |
| plot-section | Plot serial sections of 3D tumor |
| population | Functions to modify population data.frame |
| read | Read TSV files in given directories |
| sample | Sample cells from a population |
| sample-combn | Sample cells from a population |
| summarize | Summarizing functions |
| tumopp | Run tumopp |
| tumopp-package | tumopp: R interface to tumopp, a tumor growth simulator in... |
| vaf | Utilities for variant allele frequency |
| write | Utilities for writing files |
