plot-genealogy: Visualize cell genealogy

In heavywatal/tumorr: R interface to tumopp, a tumor growth simulator in C++

Visualize cell genealogy

Description

Visualize cell genealogy

Usage

augment_genealogy(graph, mu = 0, accel = 0)

gggenealogy(data, mapping = ggplot2::aes(), ...)

Arguments

graph	igraph
mu	mutation rate per cell division.
accel	assumption of accelerated mutation.
data	tbl from augment_genealogy()
mapping	ggplot2::aes()
...	passed to ggplot2::geom_segment()

Details

augment_genealogy calculates coordinates of nodes and edges for plotting.

gggenealogy() creates a basic ggplot object.

heavywatal/tumorr documentation built on April 2, 2024, 7:24 p.m.