dot-get.gene.anno: A function that returns a list of characteristics of the gene...

In helen-zhu/DPDE4PM: A Method for Peak Merging Across Biological Replicates

Description

A function that returns a list of characteristics of the gene annotation

Usage

.get.gene.anno(PARAMETERS, ANNOTATION)

Arguments

PARAMETERS	A PARAMETERS list with the parameters indicated in the DPDE4PM function
ANNOTATION	A data frame describing the annotation of genes in the GTF file, generated by the read.gtf function chr chromosome feature genomic feature start start coordinate, base 1 end stop coordinate, base 1 strand strand gene gene id in the GTF file transcript transcript id in the GTF fiile

Value

A list of gene characteristics including the following

anno

annotation of the gene

gene

gene id

chr

chromosome

left

start position of the gene

right

end position of the gene

DNA2RNA

a structure for converting the DNA to RNA

RNA2DNA

a structure for converting the RNA to DNA

dna_length

distance in bps between start and end genomic coordinates

exome_length

length of region covered by exons

helen-zhu/DPDE4PM documentation built on Feb. 17, 2021, 9:46 a.m.