dot-merge.p: A function used to merge p-values using Fisher's method

In helen-zhu/DPDE4PM: A Method for Peak Merging Across Biological Replicates

Description

A function used to merge p-values using Fisher's method

Usage

.merge.p(PEAKSGR, MERGED.PEAKS, ANNOTATION, PARAMETERS, ID.COLS)

Arguments

PEAKSGR	A GRanges object, output of the retrieve.peaks.as.granges function
MERGED.PEAKS	A GRanges object, output of the generate.peaks.from.gmm function
ANNOTATION	A data frame describing the annotation of genes in the GTF file, generated by the read.gtf function chr chromosome feature genomic feature start start coordinate, base 1 end stop coordinate, base 1 strand strand gene gene id in the GTF file transcript transcript id in the GTF file
PARAMETERS	A PARAMETERS list with the parameters indicated in the DPDE4PM function
ID.COLS	Column names of columns whose unique values are used to merge peaks

Value

A p-value matrix with columns fo each unique sample a column with the peak id

helen-zhu/DPDE4PM documentation built on Feb. 17, 2021, 9:46 a.m.