Files in helske/seqHMM
Mixture Hidden Markov Models for Social Sequence Data and Other Multivariate, Multichannel Categorical Time Series
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
Examples/HMMdefault.png
Examples/HMModel.png
Examples/gridplot.png
Examples/mixHMM1.png
Examples/mixHMM2.png
Examples/mixHMM3.png
Examples/mixHMMplot.png
Examples/mixhmmexample.R
Examples/mssplot1.png
Examples/mssplot2.png
Examples/mssplot3.png
Examples/scssp.png
Examples/seqHMMexample.R
Examples/ssp1.png
Examples/sspboth.png
Examples/sspboth_default.png
NAMESPACE
NEWS.md
R/HMMplot.R
R/RcppExports.R
R/SSPlotter.R
R/biofam3c.R
R/build_hmm.R
R/build_lcm.R
R/build_mhmm.R
R/build_mm.R
R/build_mmm.R
R/check_deprecated_args.R
R/cluster_names.R
R/colorpalette.R
R/combine_models.R
R/estimate_coef.R
R/fit_model.R
R/forwardBackward.R
R/gridplot.R
R/hidden_paths.R
R/hmm_biofam.R
R/hmm_mvad.R
R/import_seqdef.R
R/isColor.R
R/is_multichannel.R
R/logLik.hmm.R
R/logLik.mhmm.R
R/mHMMplotgrid.R
R/mHMMplotint.R
R/mc_to_sc.R
R/mc_to_sc_data.R
R/mhmm_biofam.R
R/mhmm_mvad.R
R/mssplot.R
R/plot.hmm.R
R/plot.mhmm.R
R/plot.ssp.R
R/plot_colors.R
R/posterior_probs.R
R/print.hmm.R
R/print.mhmm.R
R/print.summary.mhmm.R
R/separate_mhmm.R
R/seqHMM-deprecated.R
R/seqHMM-package.R
R/simulate_hmm.R
R/simulate_mhmm.R
R/simulate_pars.R
R/spread_models.R
R/ssp.R
R/ssplot.R
R/ssplotM.R
R/state_names.R
R/summary.mhmm.R
R/trim_hmm.R
R/vcov.mhmm.R
R/zzz.R
README.md
codecov.yml
data/biofam3c.rda
data/colorpalette.rda
data/hmm_biofam.rda
data/hmm_mvad.rda
data/mhmm_biofam.rda
data/mhmm_mvad.rda
inst/CITATION
man/TraMineR_imports.Rd
man/biofam3c.Rd
man/build_hmm.Rd
man/build_lcm.Rd
man/build_mhmm.Rd
man/build_mm.Rd
man/build_mmm.Rd
man/cluster_names-set.Rd
man/cluster_names.Rd
man/colorpalette.Rd
man/estimate_coef.Rd
man/fit_model.Rd
man/forward_backward.Rd
man/gridplot.Rd
man/hidden_paths.Rd
man/hmm_biofam.Rd
man/hmm_mvad.Rd
man/logLik.hmm.Rd
man/logLik.mhmm.Rd
man/mc_to_sc.Rd
man/mc_to_sc_data.Rd
man/mhmm_biofam.Rd
man/mhmm_mvad.Rd
man/mssplot.Rd
man/plot.hmm.Rd
man/plot.mhmm.Rd
man/plot.ssp.Rd
man/plot_colors.Rd
man/posterior_probs.Rd
man/print.Rd
man/separate_mhmm.Rd
man/seqHMM-deprecated.Rd
man/seqHMM.Rd
man/simulate_hmm.Rd
man/simulate_mhmm.Rd
man/simulate_pars.Rd
man/ssp.Rd
man/ssplot.Rd
man/state_names-set.Rd
man/state_names.Rd
man/summary.mhmm.Rd
man/trim_model.Rd
man/vcov.mhmm.Rd
manual/Art12.bib
manual/figure/MCtSCdata-1.pdf
manual/figure/MHMMplot-1.pdf
manual/figure/MHMMssplot-1.pdf
manual/figure/gridplot2-1.pdf
manual/figure/gridplotfm2-1.pdf
manual/figure/plotColors-1.pdf
manual/figure/plotHMM1-1.pdf
manual/figure/plotHMM2-1.pdf
manual/figure/plotHMM3-1.pdf
manual/figure/plotI-1.pdf
manual/figure/plotd-1.pdf
manual/figure/seqmppplot-1.pdf
manual/seqHMM-concordance.tex
manual/seqHMM.Rnw
manual/seqHMM.bbl
manual/seqHMM.ind
manual/seqHMM.pdf
manual/seqHMM.tex
manual/seqHMM.toc
src/EM.cpp
src/EMx.cpp
src/Makevars
src/RcppExports.cpp
src/forward_backward.h
src/forwardbackward.cpp
src/forwardbackwardx.cpp
src/internalBackward.cpp
src/internalForward.cpp
src/logLikHMM.cpp
src/logLikMixHMM.cpp
src/logSumExp.cpp
src/log_EM.cpp
src/log_EMx.cpp
src/log_forward_backward.h
src/log_forwardbackward.cpp
src/log_forwardbackwardx.cpp
src/log_internalBackward.cpp
src/log_internalForward.cpp
src/log_logLikHMM.cpp
src/log_logLikMixHMM.cpp
src/log_objective.cpp
src/log_objectivex.cpp
src/log_optCoef.cpp
src/logsumexp.h
src/objective.cpp
src/objectivex.cpp
src/optCoef.cpp
src/optcoef.h
src/reparma.cpp
src/reparma.h
src/sa_opt_coef.cpp
src/seqHMM.h
src/uv_forwardbackward.cpp
src/varcoef.cpp
src/viterbi.cpp
src/viterbix.cpp
tests/testthat.R
tests/testthat/test-build_hmm.R
tests/testthat/test-build_lcm.R
tests/testthat/test-build_mhmm.R
tests/testthat/test-build_mm.R
tests/testthat/test-build_mmm.R
tests/testthat/test-fit_model.R
tests/testthat/test-misc.R
tests_for_graphics/test_gridplot.R
tests_for_graphics/test_plot_models.R
tests_for_graphics/test_ssp.R
vignettes/jss.bst
vignettes/jss.cls
vignettes/mhmm.rds
vignettes/references.bib
vignettes/references_for_vignettes.bib
vignettes/sc_fit.rds
vignettes/seqHMM.Rnw
vignettes/seqHMM_algorithms.Rnw
vignettes/seqHMM_estimation.Rnw
vignettes/seqHMM_visualization.Rnw
