Man pages for hiddengenome/altum
deepG is a R library that contains a collection of scripts required for model generation and model analysis

calculateStepsPerEpochdo one full preprocessing iteration to figure out what the...
crispr_fullExample training dataset consiting of a sequence of...
crispr_sampleExample training dataset consiting of a sequence of...
end_gpu_sessionEnds the GPU sesstion
fastaFileGeneratorcustom generator for fasta files, will produce chunks in size...
getstatesGet cell states of semi-redundant chunks
getVocabularyReturns the vocabulary from character string
messagefwrapper for message(sprintf)
parenthesisTraining dataset of synthetic parenthesis language Can be...
predictNextNucleotidePredict next nucleotides in sequence output as S4 class
preprocessFastawrapper of the preprocessSemiRedundant() function called on...
preprocessSemiRedundantPreprocess string to semi redundant one-hot vector
replaceCharReplaces specific nucleotides in a sequence one by one
startGPUSessionLimit Tensorflow proccess to one or multiple GPUs.
trainNetworkTrains a (mostly) LSTM model on genomic data. Designed for...
writedictgenerates dictionary for LSTMVis
writehdf5generates hdf5 file containing the character id for each time...
hiddengenome/altum documentation built on Aug. 18, 2019, 2:07 p.m.