replaceChar: Replaces specific nucleotides in a sequence

In hiddengenome/altum: deepG

Description

Replaces specific nucleotides in a sequence

Usage

replaceChar(
  sequence,
  model,
  char = "X",
  vocabulary = c("l", "a", "c", "g", "t")
)

Arguments

sequence	input sequence, length should be in sync with the model. If length exceeds input.shape of model then only the right side of the sequence will be used.
model	trained model from the function trainNetwork()
char	character in the sequence that will be replaced
vocabulary	ordered vocabulary of input sequence

Examples

## Not run: 
example.model <- keras::load_model_hdf5("example_model.hdf5")
replaceChar(sequence = sequence, model = example.model)
## End(Not run)

hiddengenome/altum documentation built on April 22, 2020, 9:33 p.m.