generateStatesFromFolder: generate states list for tSNE from a fasta folder it is...

In hiddengenome/altum: deepG

Description

generate states list for tSNE from a fasta folder it is expected that the length of each fasta file is equal

Usage

generateStatesFromFolder(
  fasta.folder = "example_files/fasta",
  model.path = "example_files/dummy_model_cpu.hdf5",
  maxlen = 80,
  batch.size = 500,
  save = T,
  output.folder = "example_files/states/",
  verbose = T,
  exact = F
)

Arguments

fasta.folder	path to fasta folder
model.path	path to model file
maxlen	length of semi-redundant chunks
batch.size	how many chunks are predicted in parallel
save	if TRUE, output will be written to file
output.folder	path to output folder with tailing "/"
verbose	TRUE/FALSE
exact	keep exact values and dont round

hiddengenome/altum documentation built on April 22, 2020, 9:33 p.m.