predictNextNucleotide: Predict next nucleotides in sequence

In hiddengenome/altum: deepG

Description

The output is a S4 class.

Usage

predictNextNucleotide(
  sequence,
  model,
  vocabulary = c("l", "a", "c", "g", "t"),
  verbose = F
)

Arguments

sequence	input sequence, length should be in sync with the model. If length exceeds input.shape of model then only the right side of the sequence will be used.
model	trained model from the function trainNetwork()
vocabulary	vocabulary of input sequence
verbose	TRUE/FALSE

Examples

## Not run: 
example.model <- keras::load_model_hdf5("example_model.hdf5")
sequence <- strrep("A", 100)
predictNextNucleotide(sequence, example.model)
## End(Not run)

hiddengenome/altum documentation built on April 22, 2020, 9:33 p.m.