Files in hiddengenome/deepG
deepG

.RData
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/classes.R R/create_model.R R/data.R R/generators.R R/gpu-management.R R/inference.R R/package.R R/predict.R R/preprocess.R R/response_viewer.R R/tSNE.R R/tensorboard.R R/train.R R/translate_model.R R/utils.R README.md
_pkgdown.yml
altum.Rproj
codecov.yml
data-raw/crispr_1000.txt
data-raw/crispr_full.R data-raw/crispr_sample.R
data-raw/crispr_sample.txt
data-raw/ecoli.R
data-raw/ecoli.fasta
data-raw/ecoli_small.R
data-raw/ecoli_small.fasta
data-raw/parenthesis.R
data-raw/parenthesis.txt
data/crispr_full.rda
data/crispr_sample.rda
data/ecoli.rda
data/ecoli_small.rda
data/parenthesis.rda
docs/404.html
docs/LICENSE-text.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/calculateStepsPerEpoch.html
docs/reference/crispr_full.html
docs/reference/crispr_sample.html
docs/reference/deepG.html
docs/reference/ecoli.html
docs/reference/ecoliCustomScalar.html
docs/reference/ecoliEvaluation.html
docs/reference/ecoli_small.html
docs/reference/end_gpu_session.html
docs/reference/extractCellFromStates.html
docs/reference/fastaFileGenerator.html
docs/reference/figures/aws.png
docs/reference/figures/bmbf.jpeg
docs/reference/figures/dfg.jpg
docs/reference/figures/hzi.jpg
docs/reference/figures/logo.png
docs/reference/generateStatesFromFolder.html
docs/reference/generateStatesromFolder.html
docs/reference/getStates.html
docs/reference/getStatesFromFasta.html
docs/reference/getVocabulary.html
docs/reference/index.html
docs/reference/messagef.html
docs/reference/parenthesis.html
docs/reference/plotTsne.html
docs/reference/predictNextNucleotide.html
docs/reference/prediction-class.html
docs/reference/preprocessFasta.html
docs/reference/preprocessSemiRedundant.html
docs/reference/print.tf.version.html
docs/reference/replaceChar.html
docs/reference/sequenceToArray.html
docs/reference/skip_if_no_keras.html
docs/reference/splitSequence.html
docs/reference/startGPUSession.html
docs/reference/trainNetwork.html
docs/reference/tsneFromStates.html
docs/reference/writeDict.html
docs/reference/writeHdf5.html
docs/sitemap.xml
example_files/crispr.h5
example_files/dummy_model_cpu.hdf5
example_files/example.gff
example_files/example_metadata.csv
example_files/example_model_cpu_new_full_model.hdf5
example_files/fasta/a.fasta
example_files/fasta/b.fasta
example_files/fasta/c.fasta
example_files/fasta/d.fasta
example_files/fasta/e.fasta
example_files/fasta/f.fasta
example_files/genome_full.fasta
example_files/genome_subset.fasta
man/calculateStepsPerEpoch.Rd man/create_model_lstm_cnn.Rd man/crispr_full.Rd man/crispr_sample.Rd man/deepG.Rd man/ecoli.Rd man/ecoliCustomScalar.Rd man/ecoliEvaluation.Rd man/ecoli_small.Rd man/end_gpu_session.Rd man/evaluateFasta.Rd man/extractCellFromStates.Rd man/fastaFileGenerator.Rd man/fastaLabelGenerator.Rd
man/figures/aws.png
man/figures/bmbf.jpeg
man/figures/dfg.jpg
man/figures/figure.png
man/figures/hzi.jpg
man/figures/logo.png
man/generateStatesFromFolder.Rd man/getStartInd.Rd man/getStates.Rd man/getStatesFromFasta.Rd man/getVocabulary.Rd man/get_hyper_param.Rd man/gpuToCpuModel.Rd man/initializeGenerators.Rd man/labelByFolderGenerator.Rd man/labelByFolderGeneratorWrapper.Rd man/messagef.Rd man/nucleotide2value.Rd man/parenthesis.Rd man/plotTsne.Rd man/predictNextNucleotide.Rd man/prediction-class.Rd man/preprocessFasta.Rd man/preprocessSemiRedundant.Rd man/readRowsFromH5.Rd man/replaceChar.Rd man/sequenceToArray.Rd man/sequenceToArrayLabel.Rd man/skip_if_no_keras.Rd man/startGPUSession.Rd man/statesByFastaOneFile.Rd man/statesWrapper.Rd man/trainNetwork.Rd man/visualizePrediction.Rd man/writeDict.Rd man/writeHdf5.Rd man/writeStates.Rd man/writeStatesByFastaEntries.Rd tests/testthat.R
tests/testthat/example_model_cpu_new_full_model.hdf5
tests/testthat/fasta/a.fasta
tests/testthat/fasta/b.fasta
tests/testthat/fasta_2/a.fasta
tests/testthat/fasta_2/b.fasta
tests/testthat/label_folder/x/x1.fasta
tests/testthat/label_folder/x/x2.fasta
tests/testthat/label_folder/y/y1.fasta
tests/testthat/label_folder/y/y2.fasta
tests/testthat/label_folder/z/z1.fasta
tests/testthat/label_folder/z/z2.fasta
tests/testthat/test-gpuManagement.R tests/testthat/test-inferstates.R tests/testthat/test-predict.R tests/testthat/test-preprocess.R tests/testthat/test-tSNE.R tests/testthat/test-tensorboard.R tests/testthat/test-train.R tests/testthat/test-utlis.R
travis_setup.sh
hiddengenome/deepG documentation built on April 16, 2020, 1:38 a.m.