generateStatesFromFolder: generate states list for tSNE from a fasta folder it is...

Description Usage Arguments

View source: R/tSNE.R

Description

generate states list for tSNE from a fasta folder it is expected that the length of each fasta file is equal

Usage

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generateStatesFromFolder(
  fasta.folder = "example_files/fasta",
  model.path = "example_files/dummy_model_cpu.hdf5",
  maxlen = 80,
  batch.size = 500,
  save = T,
  output.folder = "example_files/states/",
  verbose = T,
  exact = F
)

Arguments

fasta.folder

path to fasta folder

model.path

path to model file

maxlen

length of semi-redundant chunks

batch.size

how many chunks are predicted in parallel

save

if TRUE, output will be written to file

output.folder

path to output folder with tailing "/"

verbose

TRUE/FALSE

exact

keep exact values and dont round


hiddengenome/deepG documentation built on April 16, 2020, 1:38 a.m.