diversities: Get alpha diversity
In hiplot/animalcules: Interactive microbiome analysis toolkit
Description
Usage
Arguments
Value
Examples
Description
Get alpha diversity
Usage
1
diversities(counts_table, index = "all", zeroes = TRUE)
Arguments
counts_table
A dataframe with organism x sample
index
One of inverse_simpson,gini_simpson,shannon,fisher,coverage,unit
zeroes
A boolean for whether to ignore zero values
Value
A list of alpha diversity
Examples
1
diversities(matrix(seq_len(12), nrow = 3),index="shannon")
hiplot/animalcules documentation built on March 1, 2021, 12:04 a.m.
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Description Usage Arguments Value Examples
Description
Get alpha diversity
Usage
1 | diversities(counts_table, index = "all", zeroes = TRUE)
|
Arguments
counts_table |
A dataframe with organism x sample |
index |
One of inverse_simpson,gini_simpson,shannon,fisher,coverage,unit |
zeroes |
A boolean for whether to ignore zero values |
Value
A list of alpha diversity
Examples
1 | diversities(matrix(seq_len(12), nrow = 3),index="shannon")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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