upsample_counts: Upsample a counts table to a higher taxon level
In hiplot/animalcules: Interactive microbiome analysis toolkit

Description Usage Arguments Value Examples

Upsample a counts table to a higher taxon level

1	upsample_counts(counts_table, tax_table, higher_level)

`counts_table`	A organism x sample data frame of counts
`tax_table`	A organism x taxlev data frame of labels
`higher_level`	Higher taxon level to upsample to

A organism x sample data frame of counts

toy_data <- readRDS(system.file("extdata/toy_data.rds", package = "animalcules"))
tax_table <- toy_data$tax_table
sam_table <- toy_data$sam_table
counts_table <- toy_data$counts_table 
counts_table <- upsample_counts(counts_table, tax_table, "phylum")