mae_pick_organisms: Modify organisms of multi-assay experiment object

Description Usage Arguments Value Examples

View source: R/utils.R

Description

Modify organisms of multi-assay experiment object

Usage

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mae_pick_organisms(MAE, isolate_organisms = NULL, discard_organisms = NULL)

Arguments

MAE

A multi-assay experiment object

isolate_organisms

Isolate specific organisms e.g. ti|001, ti|002

discard_organisms

Discard specific organisms e.g. ti|001, ti|002

Value

A multi-assay experiment object

Examples

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data_dir = system.file('extdata/MAE.rds', package = 'animalcules')
toy_data <- readRDS(data_dir)
subset <- mae_pick_organisms(toy_data, 
isolate_organisms=c('ti|001', 'ti|002'))

hiplot/animalcules documentation built on March 1, 2021, 12:04 a.m.