mae_pick_organisms: Modify organisms of multi-assay experiment object
In hiplot/animalcules: Interactive microbiome analysis toolkit
Description
Usage
Arguments
Value
Examples
Description
Modify organisms of multi-assay experiment object
Usage
1
mae_pick_organisms(MAE, isolate_organisms = NULL, discard_organisms = NULL)
Arguments
MAE
A multi-assay experiment object
isolate_organisms
Isolate specific organisms e.g. ti|001, ti|002
discard_organisms
Discard specific organisms e.g. ti|001, ti|002
Value
A multi-assay experiment object
Examples
1
2
3
4
data_dir = system.file('extdata/MAE.rds', package = 'animalcules')
toy_data <- readRDS(data_dir)
subset <- mae_pick_organisms(toy_data,
isolate_organisms=c('ti|001', 'ti|002'))
hiplot/animalcules documentation built on March 1, 2021, 12:04 a.m.
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Description Usage Arguments Value Examples
Description
Modify organisms of multi-assay experiment object
Usage
1 | mae_pick_organisms(MAE, isolate_organisms = NULL, discard_organisms = NULL)
|
Arguments
MAE |
A multi-assay experiment object |
isolate_organisms |
Isolate specific organisms e.g. ti|001, ti|002 |
discard_organisms |
Discard specific organisms e.g. ti|001, ti|002 |
Value
A multi-assay experiment object
Examples
1 2 3 4 | data_dir = system.file('extdata/MAE.rds', package = 'animalcules')
toy_data <- readRDS(data_dir)
subset <- mae_pick_organisms(toy_data,
isolate_organisms=c('ti|001', 'ti|002'))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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