diversity_beta_heatmap: Beta diversity heatmap
In hiplot/animalcules: Interactive microbiome analysis toolkit

Description Usage Arguments Value Examples

Beta diversity heatmap

diversity_beta_heatmap(
  MAE,
  tax_level,
  input_beta_method,
  input_bdhm_select_conditions,
  input_bdhm_sort_by = c("nosort", "conditions")
)

`MAE`	A multi-assay experiment object
`tax_level`	The taxon level used for organisms
`input_beta_method`	bray, jaccard
`input_bdhm_select_conditions`	Which condition to group samples
`input_bdhm_sort_by`	Sorting option e.g. "nosort", "conditions"

A plotly object

data_dir = system.file("extdata/MAE.rds", package = "animalcules")
toy_data <- readRDS(data_dir)
p <- diversity_beta_heatmap(toy_data,
                            tax_level = "genus",
                            input_beta_method = "bray",
                            input_bdhm_select_conditions = "DISEASE",
                            input_bdhm_sort_by = "conditions")
p