hloefflerwirth/oposSOM: Comprehensive analysis of transcriptome data
This package translates microarray expression data into metadata of reduced dimension. It provides various sample-centered and group-centered visualizations, sample similarity analyses and functional enrichment analyses. The underlying SOM algorithm combines feature clustering, multidimensional scaling and dimension reduction, along with strong visualization capabilities. It enables extraction and description of functional expression modules inherent in the data.
Getting started
Browse package contents
Package details |
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| Author | Henry Loeffler-Wirth <wirth@izbi.uni-leipzig.de>, Hoang Thanh Le <le@izbi.uni-leipzig.de> and Martin Kalcher <mkalcher@porkbox.net> |
| Bioconductor views | DataRepresentation DifferentialExpression GeneExpression GeneSetEnrichment Visualization |
| Maintainer | Henry Loeffler-Wirth <wirth@izbi.uni-leipzig.de> |
| License | GPL (>=2) |
| Version | 3.0.5 |
| URL | http://som.izbi.uni-leipzig.de |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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