batchedRP: calculate DEGs considering additional factors, using Rankprod

In htc502/ewrefxn: this package collects r fxns useful in my daily coding life

Description

... for additional factors that is used to group samples into more precisable sub-groups DEG will be calculated in each subgroups

Usage

batchedRP(dat.preped, pheno.mtr, comp.cls.col, class1, class2, ...)

Arguments

dat.preped	object returned by datPrep function
pheno.mtr	this is the phenotype matrix which stores all phenotypes
comp.cls.col	column number of the class in the pheno.mtr. DEGS will be calculated based on this class
class1	which class will be treated as class1 in RankProd method
class2	which class will be treated as class2 in RankProd method
...	additional column numbers of factors that is used to group samples into sub-groups

Value

a list with class labels(useful for identify up and down regulated genes based on FC) and DEGs calcualted stored in the list

htc502/ewrefxn documentation built on Feb. 2, 2020, 9:14 a.m.