enrich.test: fisher's exact test and hypergeometric test for gene set

In htc502/ewrefxn: this package collects r fxns useful in my daily coding life

Description

This fxn calculates statistics using fisher's exact test and hypergeometric test given a set of genes and gene set

Usage

enrich.test(
  PathGenes,
  interestGenes,
  totalGenes,
  comet_exact_test = F,
  mutmatplot = T
)

Arguments

PathGenes	a vector of genes belonging to a pathway
interestGenes	a vector of genes of interest
totalGenes	a vector of background genes
comet_exact_test	logical for comet exact test of mutual exclusive(requires package cometExactTest)
mutmatplot	plot mutation mat for cometExactTest result

Value

a list

Author(s)

guangchun

htc502/ewrefxn documentation built on Feb. 2, 2020, 9:14 a.m.