gseaHeatmap: Make heatmap based on gsea enrichment results
In htc502/ewrefxn: this package collects r fxns useful in my daily coding life
Description
Usage
Arguments
Value
Description
Make heatmap based on gsea enrichment results
Usage
1
2
3
4
5
6
7
gseaHeatmap(
wd = wd,
showPathway = NULL,
myPalette = NULL,
colOrder = NULL,
rowOrder = NULL
)
Arguments
wd
the directory which contains gsea result *-pos|neg.xls (actually txt) files.
showPathway
a vector contains the pathways want to show
myPalette
an optional palette function used to color the heatmap. default is brewer.pal RdYlBu.
colOrder
an optional vector specifying the column order
rowOrder
an optional vector specifying the row order
Value
ggplot2 object for downstream use
htc502/ewrefxn documentation built on Feb. 2, 2020, 9:14 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Make heatmap based on gsea enrichment results
Usage
1 2 3 4 5 6 7 | gseaHeatmap(
wd = wd,
showPathway = NULL,
myPalette = NULL,
colOrder = NULL,
rowOrder = NULL
)
|
Arguments
wd |
the directory which contains gsea result *-pos|neg.xls (actually txt) files. |
showPathway |
a vector contains the pathways want to show |
myPalette |
an optional palette function used to color the heatmap. default is brewer.pal RdYlBu. |
colOrder |
an optional vector specifying the column order |
rowOrder |
an optional vector specifying the row order |
Value
ggplot2 object for downstream use
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.