ebi.fetch: fetch gene expression data from EBI arrayexpress

In htc502/ewrefxn: this package collects r fxns useful in my daily coding life

Description

this is a wrapper function which is used to download data from EBI arrayexpress

Usage

ebi.fetch(
  accession,
  path = getwd(),
  type = "full",
  extract = T,
  local = F,
  sourcedir = path,
  ...
)

Arguments

accession	Accession number of the data, like 'E-GEOD-6039' etc
path	the directory where downloaded files will be stored in
type	be one of raw/processed/full; for download the raw/processed/both data
extract	default to T, otherwise the downloaded data will not be extracted
local	local files to be read instead of downloading from the server
sourcedir	if local is TRUE, files will be read from this dir

Value

return

htc502/ewrefxn documentation built on Feb. 2, 2020, 9:14 a.m.