Files in huayc09/SeuratExtend
SeuratExtend
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/AUCell_basic.R
R/Anndata.R
R/CalcStats.R
R/Cellrank.R
R/ClusterDistrBar.R
R/Colors.R
R/DimPlot.R
R/FeaturePlot.R
R/Functions.R
R/GeneSetAnalysis.R
R/GeneSetAnalysisGO.R
R/GeneSetAnalysisReactome.R
R/GenesymbolConversion.R
R/Heatmap.R
R/Internal.R
R/Loom.R
R/Palantir.R
R/Pseudotime.R
R/Python.R
R/RunBasicSeurat.R
R/RunSlingshot.R
R/Scenic.R
R/SearchDatabase.R
R/Vlnplots.R
R/WaterfallPlot.R
R/generics.R
R/import.R
R/runGSVA.R
R/scVelo.R
README.md
SeuratExtend.Rproj
_pkgdown.yml
data-raw/PanglaoDB.R
data-raw/Test.R
data-raw/colors_iwanthue.R
data-raw/colors_pro.R
data-raw/pbmc.R
data/PanglaoDB_data.rda
data/hall50.rda
data/human_ensembl_genesymbol.rda
data/mouse_ensembl_genesymbol.rda
data/mouse_human_genesymbols.rda
data/pbmc.rda
data/presets_color_iwh.rda
data/presets_color_pro.rda
docs/404.html
docs/LICENSE.html
docs/articles/FAQ.html
docs/articles/GSEA.html
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docs/articles/SCENIC.html
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docs/articles/Trajectory.html
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docs/articles/Trajectory_files/figure-html/calculate-pseudotime-1.png
docs/articles/Trajectory_files/figure-html/gene-trend-curve-custom-1.png
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docs/articles/Trajectory_files/figure-html/run-diffusion-map-1.png
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docs/articles/Utilities.html
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docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/BarOfCluster.html
docs/reference/BuildAUCRank.html
docs/reference/CalcScoreGeneral.html
docs/reference/CalcStats.html
docs/reference/Cellrank-Methods.html
docs/reference/ClusterDistrBar.html
docs/reference/DimPlot2.html
docs/reference/FeaturePlot3-grid.html
docs/reference/FeaturePlot3.html
docs/reference/FilterGOTerms.html
docs/reference/GSEAplot.html
docs/reference/GeneSetAnalysis.html
docs/reference/GeneTrendCurve-Methods.html
docs/reference/GeneTrendHeatmap-Methods.html
docs/reference/Heatmap.html
docs/reference/ImportPyscenicLoom.html
docs/reference/Palantir-Magic.html
docs/reference/Palantir-Methods.html
docs/reference/RenameGO.html
docs/reference/RunBasicSeurat.html
docs/reference/RunPalantirDiffusionMap.html
docs/reference/RunSlingshot.html
docs/reference/SearchDatabase.html
docs/reference/SearchPathways.html
docs/reference/StackedViolin.html
docs/reference/UniprotToGenesymbol.html
docs/reference/VlnPlot2.html
docs/reference/WaterfallPlot.html
docs/reference/WaterfallPlot_v3.html
docs/reference/adata.Load.html
docs/reference/color_iwh.html
docs/reference/color_pro.html
docs/reference/create_condaenv_seuratextend.html
docs/reference/feature_percent.html
docs/reference/gene-naming-conversions.html
docs/reference/index.html
docs/reference/ryb2rgb.html
docs/reference/save_colors.html
docs/reference/scVelo-SeuratToLoom-and-RunBasic.html
docs/reference/scVelo.SeuratToAnndata.html
docs/sitemap.xml
inst/extdata/environment-linux.yml
inst/extdata/environment-mac.yml
inst/extdata/environment-windows.yml
man/BarOfCluster.Rd
man/BuildAUCRank.Rd
man/CalcScoreGeneral.Rd
man/CalcStats.Rd
man/Cellrank-Methods.Rd
man/ClusterDistrBar.Rd
man/DimPlot2.Rd
man/FeaturePlot3-grid.Rd
man/FeaturePlot3.Rd
man/FilterGOTerms.Rd
man/GSEAplot.Rd
man/GeneSetAnalysis.Rd
man/GeneTrendCurve-Methods.Rd
man/GeneTrendHeatmap-Methods.Rd
man/Heatmap.Rd
man/ImportPyscenicLoom.Rd
man/Palantir-Magic.Rd
man/Palantir-Methods.Rd
man/RenameGO.Rd
man/RunBasicSeurat.Rd
man/RunPalantirDiffusionMap.Rd
man/RunSlingshot.Rd
man/SearchDatabase.Rd
man/SearchPathways.Rd
man/StackedViolin.Rd
man/UniprotToGenesymbol.Rd
man/VlnPlot2.Rd
man/WaterfallPlot.Rd
man/WaterfallPlot_v3.Rd
man/adata.Load.Rd
man/color_iwh.Rd
man/color_pro.Rd
man/create_condaenv_seuratextend.Rd
man/feature_percent.Rd
man/gene-naming-conversions.Rd
man/ryb2rgb.Rd
man/save_colors.Rd
man/scVelo-SeuratToLoom-and-RunBasic.Rd
man/scVelo.SeuratToAnndata.Rd
vignettes/FAQ.Rmd
vignettes/FAQ.md
vignettes/GSEA.Rmd
vignettes/GSEA.md
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vignettes/Trajectory.Rmd
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