Files in huayc09/SeuratExtend
SeuratExtend

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/AUCell_basic.R R/Anndata.R R/CalcStats.R R/Cellrank.R R/ClusterDistrBar.R R/Colors.R R/DimPlot.R R/DotPlot.R R/FeaturePlot.R R/Functions.R R/GeneSetAnalysis.R R/GeneSetAnalysisGO.R R/GeneSetAnalysisReactome.R R/GenesymbolConversion.R R/Heatmap.R R/Internal.R R/Loom.R R/Palantir.R R/Pseudotime.R R/Python.R R/RunBasicSeurat.R R/RunSlingshot.R R/Scenic.R R/SearchDatabase.R R/Vlnplots.R R/VolcanoPlot.R R/WaterfallPlot.R R/generics.R R/import.R R/runGSVA.R R/scVelo.R README.md
SeuratExtend.Rproj
_pkgdown.yml
data-raw/PanglaoDB.R data-raw/colors_iwanthue.R data-raw/colors_pro.R data-raw/pbmc.R
data/PanglaoDB_data.rda
data/hall50.rda
data/human_ensembl_genesymbol.rda
data/mouse_ensembl_genesymbol.rda
data/mouse_human_genesymbols.rda
data/pbmc.rda
data/presets_color_iwh.rda
data/presets_color_pro.rda
docs/404.html
docs/LICENSE.html
docs/articles/FAQ.html
docs/articles/GSEA.html
docs/articles/GSEA_files/figure-html/unnamed-chunk-25-1.png
docs/articles/GSEA_files/figure-html/unnamed-chunk-3-1.png
docs/articles/GSEA_files/figure-html/unnamed-chunk-4-1.png
docs/articles/GSEA_files/figure-html/unnamed-chunk-5-1.png
docs/articles/GSEA_files/figure-html/unnamed-chunk-6-1.png
docs/articles/GSEA_files/figure-html/unnamed-chunk-8-1.png
docs/articles/News.html
docs/articles/News_files/figure-html/unnamed-chunk-1-1.png
docs/articles/News_files/figure-html/unnamed-chunk-2-1.png
docs/articles/News_files/figure-html/unnamed-chunk-3-1.png
docs/articles/News_files/figure-html/unnamed-chunk-4-1.png
docs/articles/News_files/figure-html/unnamed-chunk-5-1.png
docs/articles/News_files/figure-html/unnamed-chunk-6-1.png
docs/articles/News_files/figure-html/unnamed-chunk-7-1.png
docs/articles/SCENIC.html
docs/articles/SCENIC_files/figure-html/unnamed-chunk-4-1.png
docs/articles/SCENIC_files/figure-html/unnamed-chunk-5-1.png
docs/articles/SCENIC_files/figure-html/unnamed-chunk-6-1.png
docs/articles/Trajectory.html
docs/articles/Trajectory_files/figure-html/access-slingshot-output-1.png
docs/articles/Trajectory_files/figure-html/calculate-pseudotime-1.png
docs/articles/Trajectory_files/figure-html/gene-trend-curve-custom-1.png
docs/articles/Trajectory_files/figure-html/gene-trend-curve-initial-1.png
docs/articles/Trajectory_files/figure-html/gene-trend-curve-slingshot-1.png
docs/articles/Trajectory_files/figure-html/gene-trend-heatmap-1.png
docs/articles/Trajectory_files/figure-html/gene-trend-heatmap-slingshot-1.png
docs/articles/Trajectory_files/figure-html/run-diffusion-map-1.png
docs/articles/Trajectory_files/figure-html/run-magic-1.png
docs/articles/Utilities.html
docs/articles/Utilities_files/figure-html/unnamed-chunk-11-1.png
docs/articles/Utilities_files/figure-html/unnamed-chunk-12-1.png
docs/articles/Utilities_files/figure-html/unnamed-chunk-15-1.png
docs/articles/Utilities_files/figure-html/unnamed-chunk-22-1.png
docs/articles/Visualization.html
docs/articles/Visualization_files/RGB_mixing.png
docs/articles/Visualization_files/RYB_mixing.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-1-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-10-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-11-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-12-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-13-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-14-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-16-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-17-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-17-2.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-18-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-19-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-2-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-20-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-21-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-22-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-23-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-24-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-25-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-26-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-27-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-28-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-29-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-3-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-30-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-31-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-32-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-33-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-34-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-35-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-36-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-37-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-38-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-39-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-4-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-40-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-42-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-43-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-44-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-45-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-46-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-47-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-48-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-49-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-5-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-50-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-51-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-52-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-53-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-54-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-55-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-56-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-57-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-58-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-59-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-6-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-60-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-61-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-62-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-63-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-64-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-65-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-66-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-68-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-7-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-70-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-72-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-74-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-76-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-77-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-78-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-8-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-80-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-81-1.png
docs/articles/Visualization_files/figure-html/unnamed-chunk-9-1.png
docs/articles/figures/scvelo_quick_start_scvelo.png
docs/articles/figures/scvelo_umap1.png
docs/articles/figures/scvelo_umap2_specified_area.png
docs/articles/figures/scvelo_umap3_ms.png
docs/articles/figures/scvelo_umap3_ms_cellrank.png
docs/articles/figures/scvelo_umap4_load_adata.png
docs/articles/quick_start_files/figure-gfm/unnamed-chunk-1-1.png
docs/articles/quick_start_files/figure-gfm/unnamed-chunk-10-1.png
docs/articles/quick_start_files/figure-gfm/unnamed-chunk-11-1.png
docs/articles/quick_start_files/figure-gfm/unnamed-chunk-13-1.png
docs/articles/quick_start_files/figure-gfm/unnamed-chunk-14-1.png
docs/articles/quick_start_files/figure-gfm/unnamed-chunk-15-1.png
docs/articles/quick_start_files/figure-gfm/unnamed-chunk-16-1.png
docs/articles/quick_start_files/figure-gfm/unnamed-chunk-2-1.png
docs/articles/quick_start_files/figure-gfm/unnamed-chunk-3-1.png
docs/articles/quick_start_files/figure-gfm/unnamed-chunk-4-1.png
docs/articles/quick_start_files/figure-gfm/unnamed-chunk-5-1.png
docs/articles/quick_start_files/figure-gfm/unnamed-chunk-6-1.png
docs/articles/quick_start_files/figure-gfm/unnamed-chunk-7-1.png
docs/articles/quick_start_files/figure-gfm/unnamed-chunk-8-1.png
docs/articles/quick_start_files/figure-gfm/unnamed-chunk-9-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-10-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-11-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-12-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-13-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-14-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-15-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-16-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-17-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-18-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-19-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-20-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-21-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-43-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-44-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-45-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-46-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-47-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-48-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-49-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-5-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-50-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-51-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-53-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-54-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-55-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-56-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-6-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-7-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-8-1.png
docs/articles/quick_start_files/figure-markdown_strict/unnamed-chunk-9-1.png
docs/articles/single-cell-course/1.basic-R.html
docs/articles/single-cell-course/1.basic-R_files/figure-html/unnamed-chunk-29-1.png
docs/articles/single-cell-course/1.basic-R_files/figure-html/unnamed-chunk-29-2.png
docs/articles/single-cell-course/2.Seurat.html
docs/articles/single-cell-course/2.Seurat_files/figure-html/unnamed-chunk-17-1.png
docs/articles/single-cell-course/2.Seurat_files/figure-html/unnamed-chunk-18-1.png
docs/articles/single-cell-course/2.Seurat_files/figure-html/unnamed-chunk-19-1.png
docs/articles/single-cell-course/2.Seurat_files/figure-html/unnamed-chunk-20-1.png
docs/articles/single-cell-course/2.Seurat_files/figure-html/unnamed-chunk-22-1.png
docs/articles/single-cell-course/2.Seurat_files/figure-html/unnamed-chunk-24-1.png
docs/articles/single-cell-course/2.Seurat_files/figure-html/unnamed-chunk-25-1.png
docs/articles/single-cell-course/2.Seurat_files/figure-html/unnamed-chunk-26-1.png
docs/articles/single-cell-course/2.Seurat_files/figure-html/unnamed-chunk-27-1.png
docs/articles/single-cell-course/3.Visualization.html
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-1-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-10-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-11-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-12-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-13-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-14-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-15-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-16-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-17-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-18-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-19-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-2-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-20-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-21-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-22-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-23-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-24-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-25-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-26-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-27-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-29-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-3-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-30-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-31-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-32-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-33-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-34-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-35-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-36-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-37-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-38-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-39-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-4-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-40-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-41-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-42-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-43-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-44-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-45-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-46-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-47-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-48-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-49-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-5-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-50-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-6-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-7-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-8-1.png
docs/articles/single-cell-course/3.Visualization_files/figure-html/unnamed-chunk-9-1.png
docs/articles/single-cell-course/4.GSEA.html
docs/articles/single-cell-course/4.GSEA_files/figure-html/unnamed-chunk-10-1.png
docs/articles/single-cell-course/4.GSEA_files/figure-html/unnamed-chunk-11-1.png
docs/articles/single-cell-course/4.GSEA_files/figure-html/unnamed-chunk-25-1.png
docs/articles/single-cell-course/4.GSEA_files/figure-html/unnamed-chunk-26-1.png
docs/articles/single-cell-course/4.GSEA_files/figure-html/unnamed-chunk-36-1.png
docs/articles/single-cell-course/4.GSEA_files/figure-html/unnamed-chunk-37-1.png
docs/articles/single-cell-course/4.GSEA_files/figure-html/unnamed-chunk-38-1.png
docs/articles/single-cell-course/4.GSEA_files/figure-html/unnamed-chunk-39-1.png
docs/articles/single-cell-course/4.GSEA_files/figure-html/unnamed-chunk-4-1.png
docs/articles/single-cell-course/4.GSEA_files/figure-html/unnamed-chunk-5-1.png
docs/articles/single-cell-course/4.GSEA_files/figure-html/unnamed-chunk-6-1.png
docs/articles/single-cell-course/4.GSEA_files/figure-html/unnamed-chunk-7-1.png
docs/articles/single-cell-course/4.GSEA_files/figure-html/unnamed-chunk-8-1.png
docs/articles/single-cell-course/5.Core-Enhancement.html
docs/articles/single-cell-course/5.Core-Enhancement_files/figure-html/unnamed-chunk-10-1.png
docs/articles/single-cell-course/5.Core-Enhancement_files/figure-html/unnamed-chunk-11-1.png
docs/articles/single-cell-course/5.Core-Enhancement_files/figure-html/unnamed-chunk-13-1.png
docs/articles/single-cell-course/5.Core-Enhancement_files/figure-html/unnamed-chunk-14-1.png
docs/articles/single-cell-course/5.Core-Enhancement_files/figure-html/unnamed-chunk-15-1.png
docs/articles/single-cell-course/5.Core-Enhancement_files/figure-html/unnamed-chunk-19-1.png
docs/articles/single-cell-course/5.Core-Enhancement_files/figure-html/unnamed-chunk-2-1.png
docs/articles/single-cell-course/5.Core-Enhancement_files/figure-html/unnamed-chunk-20-1.png
docs/articles/single-cell-course/5.Core-Enhancement_files/figure-html/unnamed-chunk-3-1.png
docs/articles/single-cell-course/5.Core-Enhancement_files/figure-html/unnamed-chunk-4-1.png
docs/articles/single-cell-course/5.Core-Enhancement_files/figure-html/unnamed-chunk-7-1.png
docs/articles/single-cell-course/5.Core-Enhancement_files/figure-html/unnamed-chunk-8-1.png
docs/articles/single-cell-course/6.Advanced-2.html
docs/articles/single-cell-course/6.Advanced-2_files/figure-html/visualize-magic-1.png
docs/articles/single-cell-course/6.Advanced-2_files/figure-html/visualize_results-1.png
docs/articles/single-cell-course/6.Advanced.html
docs/articles/single-cell-course/6.Advanced_files/figure-html/gene_trends-1.png
docs/articles/single-cell-course/6.Advanced_files/figure-html/gene_trends-2.png
docs/articles/single-cell-course/6.Advanced_files/figure-html/ligand_activity-1.png
docs/articles/single-cell-course/6.Advanced_files/figure-html/ligand_expression-1.png
docs/articles/single-cell-course/6.Advanced_files/figure-html/palantir_dm-1.png
docs/articles/single-cell-course/6.Advanced_files/figure-html/palantir_pseudotime-1.png
docs/articles/single-cell-course/6.Advanced_files/figure-html/unnamed-chunk-5-1.png
docs/articles/single-cell-course/6.Advanced_files/figure-html/unnamed-chunk-6-1.png
docs/articles/single-cell-course/6.Advanced_files/figure-html/unnamed-chunk-7-1.png
docs/articles/single-cell-course/6.Advanced_files/figure-html/unnamed-chunk-8-1.png
docs/articles/single-cell-course/6.Advanced_files/figure-html/visualize_cellchat-1.png
docs/articles/single-cell-course/6.Advanced_files/figure-html/visualize_cellchat-2.png
docs/articles/single-cell-course/figures/scvelo_scvelo_basic.png
docs/articles/single-cell-course/figures/scvelo_scvelo_custom.png
docs/articles/single-cell-course/images/RGB_mixing.png
docs/articles/single-cell-course/images/RYB_mixing.png
docs/articles/single-cell-course/images/fastq_example.png
docs/articles/single-cell-course/images/final_umap.png
docs/articles/single-cell-course/images/gene_count_matrix.png
docs/articles/single-cell-course/images/normalized_gene_expression.png
docs/articles/single-cell-course/images/pca_output.png
docs/articles/single-cell-course/images/rstudio_interface.png
docs/articles/single-cell-course/images/sc_analysis_flowchart.png
docs/articles/single-cell-course/images/scenic_gene_regulatory_networks.png
docs/articles/single-cell-course/images/test_copykat_heatmap.jpeg
docs/articles/single-cell-course/images/umap_coordinates.png
docs/articles/single-cell-course/images/umap_example.png
docs/articles/single-cell-course/images/unsupervised_clustering.png
docs/articles/single-cell-course/results/pbmc_umap_plot.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/deps/Roboto-0.4.9/KFOmCnqEu92Fr1Mu4WxKOzY.woff2
docs/deps/Roboto-0.4.9/KFOmCnqEu92Fr1Mu4mxK.woff2
docs/deps/Roboto-0.4.9/KFOmCnqEu92Fr1Mu5mxKOzY.woff2
docs/deps/Roboto-0.4.9/KFOmCnqEu92Fr1Mu72xKOzY.woff2
docs/deps/Roboto-0.4.9/KFOmCnqEu92Fr1Mu7GxKOzY.woff2
docs/deps/Roboto-0.4.9/KFOmCnqEu92Fr1Mu7WxKOzY.woff2
docs/deps/Roboto-0.4.9/KFOmCnqEu92Fr1Mu7mxKOzY.woff2
docs/deps/Roboto-0.4.9/font.css
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.3.1/bootstrap.min.css
docs/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js
docs/deps/clipboard.js-2.0.11/clipboard.min.js
docs/deps/data-deps.txt
docs/deps/font-awesome-6.4.2/css/all.css
docs/deps/font-awesome-6.4.2/css/all.min.css
docs/deps/font-awesome-6.4.2/css/v4-shims.css
docs/deps/font-awesome-6.4.2/css/v4-shims.min.css
docs/deps/font-awesome-6.4.2/webfonts/fa-brands-400.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-brands-400.woff2
docs/deps/font-awesome-6.4.2/webfonts/fa-regular-400.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-regular-400.woff2
docs/deps/font-awesome-6.4.2/webfonts/fa-solid-900.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-solid-900.woff2
docs/deps/font-awesome-6.4.2/webfonts/fa-v4compatibility.ttf
docs/deps/font-awesome-6.4.2/webfonts/fa-v4compatibility.woff2
docs/deps/headroom-0.11.0/headroom.min.js
docs/deps/headroom-0.11.0/jQuery.headroom.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/deps/search-1.0.0/autocomplete.jquery.min.js
docs/deps/search-1.0.0/fuse.min.js
docs/deps/search-1.0.0/mark.min.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/katex-auto.js
docs/lightswitch.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/BarOfCluster.html
docs/reference/BuildAUCRank.html
docs/reference/CalcScoreGeneral.html
docs/reference/CalcStats.html
docs/reference/Cellrank-Methods.html
docs/reference/ClusterDistrBar.html
docs/reference/DimPlot2.html
docs/reference/DotPlot2.html
docs/reference/FeaturePlot3-grid.html
docs/reference/FeaturePlot3.html
docs/reference/FilterGOTerms.html
docs/reference/GSEAplot.html
docs/reference/GeneSetAnalysis.html
docs/reference/GeneTrendCurve-Methods.html
docs/reference/GeneTrendHeatmap-Methods.html
docs/reference/Heatmap.html
docs/reference/ImportPyscenicLoom.html
docs/reference/Palantir-Magic.html
docs/reference/Palantir-Methods.html
docs/reference/RenameGO.html
docs/reference/RunBasicSeurat.html
docs/reference/RunPalantirDiffusionMap.html
docs/reference/RunSlingshot.html
docs/reference/SearchDatabase.html
docs/reference/SearchPathways.html
docs/reference/StackedViolin.html
docs/reference/UniprotToGenesymbol.html
docs/reference/VlnPlot2.html
docs/reference/VolcanoPlot.html
docs/reference/WaterfallPlot.html
docs/reference/WaterfallPlot_v3.html
docs/reference/adata.Load.html
docs/reference/color_iwh.html
docs/reference/color_pro.html
docs/reference/create_condaenv_seuratextend.html
docs/reference/feature_percent.html
docs/reference/gene-naming-conversions.html
docs/reference/index.html
docs/reference/ryb2rgb.html
docs/reference/save_colors.html
docs/reference/scVelo-SeuratToLoom-and-RunBasic.html
docs/reference/scVelo.SeuratToAnndata.html
docs/reference/show_col2.html
docs/reference/theme_umap_arrows.html
inst/extdata/environment-linux.yml
inst/extdata/environment-mac-silicon.yml
inst/extdata/environment-mac.yml
inst/extdata/environment-windows.yml
man/BarOfCluster.Rd man/BuildAUCRank.Rd man/CalcScoreGeneral.Rd man/CalcStats.Rd man/Cellrank-Methods.Rd man/ClusterDistrBar.Rd man/DimPlot2.Rd man/DotPlot2.Rd man/FeaturePlot3-grid.Rd man/FeaturePlot3.Rd man/FilterGOTerms.Rd man/GSEAplot.Rd man/GeneSetAnalysis.Rd man/GeneTrendCurve-Methods.Rd man/GeneTrendHeatmap-Methods.Rd man/Heatmap.Rd man/ImportPyscenicLoom.Rd man/Palantir-Magic.Rd man/Palantir-Methods.Rd man/RenameGO.Rd man/RunBasicSeurat.Rd man/RunPalantirDiffusionMap.Rd man/RunSlingshot.Rd man/SearchDatabase.Rd man/SearchPathways.Rd man/StackedViolin.Rd man/UniprotToGenesymbol.Rd man/VlnPlot2.Rd man/VolcanoPlot.Rd man/WaterfallPlot.Rd man/WaterfallPlot_v3.Rd man/activate_python.Rd man/adata.Load.Rd man/color_iwh.Rd man/color_pro.Rd man/create_condaenv_seuratextend.Rd man/feature_percent.Rd man/gene-naming-conversions.Rd man/ryb2rgb.Rd man/save_colors.Rd man/scVelo-SeuratToLoom-and-RunBasic.Rd man/scVelo.SeuratToAnndata.Rd man/show_col2.Rd man/theme_umap_arrows.Rd vignettes/FAQ.Rmd vignettes/FAQ.md vignettes/GSEA.Rmd vignettes/GSEA.md
vignettes/GSEA_files/figure-markdown_strict/unnamed-chunk-25-1.png
vignettes/GSEA_files/figure-markdown_strict/unnamed-chunk-3-1.png
vignettes/GSEA_files/figure-markdown_strict/unnamed-chunk-4-1.png
vignettes/GSEA_files/figure-markdown_strict/unnamed-chunk-5-1.png
vignettes/GSEA_files/figure-markdown_strict/unnamed-chunk-6-1.png
vignettes/GSEA_files/figure-markdown_strict/unnamed-chunk-8-1.png
vignettes/News.Rmd vignettes/News.md
vignettes/News_files/figure-gfm/unnamed-chunk-1-1.png
vignettes/News_files/figure-gfm/unnamed-chunk-2-1.png
vignettes/News_files/figure-gfm/unnamed-chunk-24-1.png
vignettes/News_files/figure-gfm/unnamed-chunk-24-2.png
vignettes/News_files/figure-gfm/unnamed-chunk-25-1.png
vignettes/News_files/figure-gfm/unnamed-chunk-26-1.png
vignettes/News_files/figure-gfm/unnamed-chunk-27-1.png
vignettes/News_files/figure-gfm/unnamed-chunk-28-1.png
vignettes/News_files/figure-gfm/unnamed-chunk-29-1.png
vignettes/News_files/figure-gfm/unnamed-chunk-3-1.png
vignettes/News_files/figure-gfm/unnamed-chunk-30-1.png
vignettes/News_files/figure-gfm/unnamed-chunk-4-1.png
vignettes/News_files/figure-gfm/unnamed-chunk-5-1.png
vignettes/News_files/figure-gfm/unnamed-chunk-6-1.png
vignettes/News_files/figure-gfm/unnamed-chunk-7-1.png
vignettes/SCENIC.Rmd vignettes/SCENIC.md
vignettes/SCENIC_files/figure-markdown_strict/unnamed-chunk-11-1.png
vignettes/SCENIC_files/figure-markdown_strict/unnamed-chunk-12-1.png
vignettes/SCENIC_files/figure-markdown_strict/unnamed-chunk-13-1.png
vignettes/SCENIC_files/figure-markdown_strict/unnamed-chunk-17-1.png
vignettes/SCENIC_files/figure-markdown_strict/unnamed-chunk-18-1.png
vignettes/SCENIC_files/figure-markdown_strict/unnamed-chunk-19-1.png
vignettes/SCENIC_files/figure-markdown_strict/unnamed-chunk-4-1.png
vignettes/SCENIC_files/figure-markdown_strict/unnamed-chunk-5-1.png
vignettes/SCENIC_files/figure-markdown_strict/unnamed-chunk-6-1.png
vignettes/Trajectory.Rmd vignettes/Trajectory.md
vignettes/Trajectory_files/figure-gfm/access-slingshot-output-1.png
vignettes/Trajectory_files/figure-gfm/calculate-pseudotime-1.png
vignettes/Trajectory_files/figure-gfm/gene-trend-curve-custom-1.png
vignettes/Trajectory_files/figure-gfm/gene-trend-curve-initial-1.png
vignettes/Trajectory_files/figure-gfm/gene-trend-curve-slingshot-1.png
vignettes/Trajectory_files/figure-gfm/gene-trend-heatmap-1.png
vignettes/Trajectory_files/figure-gfm/gene-trend-heatmap-slingshot-1.png
vignettes/Trajectory_files/figure-gfm/run-diffusion-map-1.png
vignettes/Trajectory_files/figure-gfm/run-magic-1.png
vignettes/Trajectory_files/figure-markdown_strict/access-slingshot-output-1.png
vignettes/Trajectory_files/figure-markdown_strict/calculate-pseudotime-1.png
vignettes/Trajectory_files/figure-markdown_strict/gene-trend-curve-custom-1.png
vignettes/Trajectory_files/figure-markdown_strict/gene-trend-curve-initial-1.png
vignettes/Trajectory_files/figure-markdown_strict/gene-trend-curve-slingshot-1.png
vignettes/Trajectory_files/figure-markdown_strict/gene-trend-heatmap-1.png
vignettes/Trajectory_files/figure-markdown_strict/gene-trend-heatmap-slingshot-1.png
vignettes/Trajectory_files/figure-markdown_strict/run-diffusion-map-1.png
vignettes/Trajectory_files/figure-markdown_strict/run-magic-1.png
vignettes/Trajectory_files/figure-markdown_strict/select-start-cells-1.png
vignettes/Trajectory_files/figure-markdown_strict/visualize-scvelo-1.png
vignettes/Utilities.Rmd vignettes/Utilities.md
vignettes/Utilities_files/figure-markdown_strict/unnamed-chunk-11-1.png
vignettes/Utilities_files/figure-markdown_strict/unnamed-chunk-12-1.png
vignettes/Utilities_files/figure-markdown_strict/unnamed-chunk-13-1.png
vignettes/Utilities_files/figure-markdown_strict/unnamed-chunk-14-1.png
vignettes/Utilities_files/figure-markdown_strict/unnamed-chunk-15-1.png
vignettes/Utilities_files/figure-markdown_strict/unnamed-chunk-17-1.png
vignettes/Utilities_files/figure-markdown_strict/unnamed-chunk-22-1.png
vignettes/Utilities_files/figure-markdown_strict/unnamed-chunk-24-1.png
vignettes/Utilities_files/figure-markdown_strict/unnamed-chunk-48-1.png
vignettes/Utilities_files/figure-markdown_strict/unnamed-chunk-49-1.png
vignettes/Utilities_files/figure-markdown_strict/unnamed-chunk-52-1.png
vignettes/Utilities_files/figure-markdown_strict/unnamed-chunk-59-1.png
vignettes/Visualization.Rmd vignettes/Visualization.md
vignettes/Visualization_files/RGB_mixing.png
vignettes/Visualization_files/RYB_mixing.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-1-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-10-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-11-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-12-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-13-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-14-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-16-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-17-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-17-2.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-18-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-19-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-2-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-20-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-21-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-22-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-23-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-24-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-25-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-26-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-27-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-28-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-29-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-3-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-30-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-31-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-32-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-33-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-34-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-35-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-36-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-37-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-38-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-39-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-4-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-40-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-42-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-43-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-44-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-45-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-46-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-47-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-48-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-49-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-5-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-50-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-51-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-52-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-53-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-54-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-55-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-56-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-57-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-58-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-59-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-6-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-60-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-61-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-62-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-63-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-64-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-65-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-66-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-68-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-7-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-70-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-72-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-74-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-76-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-77-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-78-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-8-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-80-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-81-1.png
vignettes/Visualization_files/figure-gfm/unnamed-chunk-9-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-1-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-10-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-11-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-12-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-13-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-14-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-15-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-16-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-17-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-17-2.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-18-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-19-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-2-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-20-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-21-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-22-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-23-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-24-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-25-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-26-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-27-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-28-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-29-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-3-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-3-2.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-30-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-31-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-32-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-33-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-34-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-35-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-36-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-37-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-38-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-39-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-4-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-40-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-41-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-42-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-43-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-44-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-45-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-46-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-47-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-48-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-49-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-5-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-50-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-51-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-52-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-53-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-54-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-55-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-56-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-57-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-58-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-59-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-6-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-60-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-61-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-62-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-63-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-64-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-65-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-67-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-69-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-7-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-70-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-71-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-73-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-74-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-75-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-76-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-77-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-78-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-79-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-8-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-80-1.png
vignettes/Visualization_files/figure-markdown_strict/unnamed-chunk-9-1.png
vignettes/figures/scvelo_quick_start_scvelo.png
vignettes/figures/scvelo_umap1.png
vignettes/figures/scvelo_umap2_specified_area.png
vignettes/figures/scvelo_umap3_ms.png
vignettes/figures/scvelo_umap3_ms_cellrank.png
vignettes/figures/scvelo_umap4_load_adata.png
vignettes/quick_start.Rmd vignettes/quick_start.md
vignettes/quick_start_files/figure-gfm/unnamed-chunk-1-1.png
vignettes/quick_start_files/figure-gfm/unnamed-chunk-10-1.png
vignettes/quick_start_files/figure-gfm/unnamed-chunk-11-1.png
vignettes/quick_start_files/figure-gfm/unnamed-chunk-13-1.png
vignettes/quick_start_files/figure-gfm/unnamed-chunk-14-1.png
vignettes/quick_start_files/figure-gfm/unnamed-chunk-15-1.png
vignettes/quick_start_files/figure-gfm/unnamed-chunk-16-1.png
vignettes/quick_start_files/figure-gfm/unnamed-chunk-2-1.png
vignettes/quick_start_files/figure-gfm/unnamed-chunk-3-1.png
vignettes/quick_start_files/figure-gfm/unnamed-chunk-4-1.png
vignettes/quick_start_files/figure-gfm/unnamed-chunk-5-1.png
vignettes/quick_start_files/figure-gfm/unnamed-chunk-6-1.png
vignettes/quick_start_files/figure-gfm/unnamed-chunk-7-1.png
vignettes/quick_start_files/figure-gfm/unnamed-chunk-8-1.png
vignettes/quick_start_files/figure-gfm/unnamed-chunk-9-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-10-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-11-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-12-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-13-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-14-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-15-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-16-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-17-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-18-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-19-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-20-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-21-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-43-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-44-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-45-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-46-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-47-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-48-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-49-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-5-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-50-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-51-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-53-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-54-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-55-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-56-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-6-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-7-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-8-1.png
vignettes/quick_start_files/figure-markdown_strict/unnamed-chunk-9-1.png
huayc09/SeuratExtend documentation built on March 29, 2025, 7:28 p.m.