.Rbuildignore
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DESCRIPTION
LICENSE.md
NAMESPACE
R/AUCell_basic.R
R/Anndata.R
R/CalcStats.R
R/Cellrank.R
R/ClusterDistrBar.R
R/Colors.R
R/DimPlot.R
R/DotPlot.R
R/FeaturePlot.R
R/Functions.R
R/GeneSetAnalysis.R
R/GeneSetAnalysisGO.R
R/GeneSetAnalysisReactome.R
R/GenesymbolConversion.R
R/Heatmap.R
R/Internal.R
R/Loom.R
R/Palantir.R
R/Pseudotime.R
R/Python.R
R/RunBasicSeurat.R
R/RunSlingshot.R
R/Scenic.R
R/SearchDatabase.R
R/Vlnplots.R
R/VolcanoPlot.R
R/WaterfallPlot.R
R/generics.R
R/import.R
R/runGSVA.R
R/scVelo.R
README.md
SeuratExtend.Rproj
_pkgdown.yml
data-raw/PanglaoDB.R
data-raw/colors_iwanthue.R
data-raw/colors_pro.R
data-raw/pbmc.R
data/PanglaoDB_data.rda
data/hall50.rda
data/human_ensembl_genesymbol.rda
data/mouse_ensembl_genesymbol.rda
data/mouse_human_genesymbols.rda
data/pbmc.rda
data/presets_color_iwh.rda
data/presets_color_pro.rda
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