Man pages for hubentu/VarReviewer
Variant Reviewer
| dot-checkExRanges | Class to add ref/alt to GRanges |
| filterReads | filter out reads based on mapq and LQ20 |
| GAlnCheck | Check ref/alt counts for given GAlignments |
| getReferenceSeq | Extract reference sequence |
| MAP | MAP function for reduceByFile |
| reAlign | Local re-align reads |
| RefAltAln | Construct alternative reference sequence |
| repReg | check repeat region |
| verIndel | Verify Indel alignments |
| viewAligns | viewAligns |
