RefAltAln: Construct alternative reference sequence
In hubentu/VarReviewer: Variant Reviewer
Description
To construct an alternative referecen sequence.
This depend on:
1. the standard and alternative sequence
2. check region, in particular the start position
3. the standard sequence
Usage
1
2
RefAltAln(vrange, reads, check.range,
genome = BSgenome.Hsapiens.UCSC.hg38)
Details
ISSUE: in repeatRegion()/repReg() we had calculated alta. relationship?
hubentu/VarReviewer documentation built on June 7, 2019, 12:48 a.m.
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Description
To construct an alternative referecen sequence. This depend on: 1. the standard and alternative sequence 2. check region, in particular the start position 3. the standard sequence
Usage
1 2 | RefAltAln(vrange, reads, check.range,
genome = BSgenome.Hsapiens.UCSC.hg38)
|
Details
ISSUE: in repeatRegion()/repReg() we had calculated alta. relationship?
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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