getReferenceSeq: Extract reference sequence
In hubentu/VarReviewer: Variant Reviewer
Description
Get the segments of reference sequence from BSgenome library or a fastq file
Usage
1
getReferenceSeq(gr, genome = BSgenome.Hsapiens.UCSC.hg38)
Arguments
gr
a GRange object indicate the range to retrieve
genome
a character string for fasta file location, or a BSgenome reference object
hubentu/VarReviewer documentation built on June 7, 2019, 12:48 a.m.
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Description
Get the segments of reference sequence from BSgenome library or a fastq file
Usage
1 | getReferenceSeq(gr, genome = BSgenome.Hsapiens.UCSC.hg38)
|
Arguments
gr |
a GRange object indicate the range to retrieve |
genome |
a character string for fasta file location, or a BSgenome reference object |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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