viewAligns: viewAligns

In hubentu/VarReviewer: Variant Reviewer

Description

view BAM files in a given range using igvR.

Usage

viewAligns(grange, bams = NULL, aligns = NULL, genome = "hg19",
  window = 50, bamParam = list(), ...)

Arguments

grange	A GRanges object.
bams	PATHs of the BAM files.
aligns	A 'GAlignments' or 'GAlignmentsList' object.
genome	A character string, one of "hg38", "hg19", "mm10", "tair10".
window	The windown to extend for the GRanges.
bamParam	The option list for 'ScanBamParam'.
...	Other options for 'igvR'.

hubentu/VarReviewer documentation built on June 7, 2019, 12:48 a.m.