split_exposures_by_subgroups: Split an exposures data frame by subgroups

In huebschm/YAPSA: Yet Another Package for Signature Analysis

Description

If a cohort consists of different subgroups, this function enables to split the data frame storing the signature exposures into a list of data frames with signature exposures, one per subgroup. This functionality is needed for stat_test_subgroups and stat_plot_subgroups

Usage

split_exposures_by_subgroups(in_exposures_df, in_subgroups_df,
  in_subgroups.field = "subgroup", in_PID.field = "PID")

Arguments

in_exposures_df	Numerical data frame of the exposures (i.e. contributions of the different signatures to the number of point mutations per PID)
in_subgroups_df	Data frame indicating which PID belongs to which subgroup
in_subgroups.field	Name indicating which column in in_subgroups_df contains the subgroup information
in_PID.field	Name indicating which column in in_subgroups_df contains the PID information

Value

List of data frames with the subgroup specific signature exposures.

See Also

stat_test_subgroups

stat_plot_subgroups

Examples

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huebschm/YAPSA documentation built on May 17, 2019, 9:11 p.m.