hutaobo/AluScanCNV2
An R package for copy number variation-based cancer risk prediction

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pairedCNV: Paired CNV calling

pairedCNV: Paired CNV calling
In hutaobo/AluScanCNV2: An R package for copy number variation-based cancer risk prediction

Description Usage Examples

View source: R/pairedCNV.R

Description

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4273479/pdf/13336_2014_Article_15.pdf

Usage

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pairedCNV(sample.5k.doc, control.5k.doc, window.size = c("500k", "400k",
  "300k", "250k", "200k", "100k", "50k"), gender = c("M", "F"),
  qOutlier = 0.95, output.path = "./", replace = TRUE, ...)

Examples

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control_doc_path <- system.file("extdata/Breast1_b.5k.doc", package = "AluScanCNV")
tumor_doc_path <- system.file("extdata/Breast1_1.5k.doc", package = "AluScanCNV")
pairedCNV(control.5k.doc = control_doc_path, sample.5k.doc = tumor_doc_path, window.size = "500k", output.path = "./")

hutaobo/AluScanCNV2 documentation built on May 27, 2019, 3:31 p.m.

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