hw538/cfDNAPro: cfDNAPro extracts and Visualises biological features from whole genome sequencing data of cell-free DNA

cfDNA fragments carry important features for building cancer sample classification ML models, such as fragment size, and fragment end motif etc. Analyzing and visualizing fragment size metrics, as well as other biological features in a curated, standardized, scalable, well-documented, and reproducible way might be time intensive. This package intends to resolve these problems and simplify the process. It offers two sets of functions for cfDNA feature characterization and visualization.

Getting started

Package details

Bioconductor views Sequencing Visualization WholeGenome
Maintainer
LicenseGPL-3
Version1.7.1
URL https://github.com/hw538/cfDNAPro
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("hw538/cfDNAPro")
hw538/cfDNAPro documentation built on Aug. 13, 2024, 2:58 p.m.