API for hw538/cfDNAPro
This Package Helps Analyze and Visualize Whole Genome Sequencing Data from Liquid Biopsy

Global functions
AllGroupMetrics Source code
AllGroupMode_Dataframe Source code
AllGroupMode_List Source code
AllGroupPropCdfMeanMedian_Dataframe Source code
AllGroupPropCdfMeanMedian_List Source code
AllGroupPropCdfMean_Dataframe Source code
AllGroupPropCdfMean_List Source code
AllGroupPropCdfMedian_Dataframe Source code
AllGroupPropCdfMedian_List Source code
AllGroupPropCdf_Dataframe Source code
AllGroupPropCdf_List Source code
AllGroupPropMean_Dataframe Source code
AllGroupPropMean_List Source code
AllGroupPropMedian_Dataframe Source code
AllGroupPropMedian_List Source code
AllGroupProp_Dataframe Source code
AllGroupProp_List Source code
GroupPeakFocus Source code
GroupValleyFocus Source code
InsertSizeProp Source code
InsertSizePropMean Source code
InsertSizePropMedian Source code
InsertSizePropMode Source code
InterPeakDist Source code
InterValleyDist Source code
calcualte_interpeak_dist Source code
calcualte_intervalley_dist Source code
calculate_breaks_for_mode_plot Source code
calculate_labels_for_mode_plot Source code
calculate_mean_for_df Source code
calculate_mean_for_list Source code
calculate_median_for_df Source code
calculate_median_for_list Source code
calculate_peaks Source code
calculate_prop Source code
calculate_prop_cdf Source code
calculate_propcdf_mean_for_list Source code
calculate_propcdf_meanmedian_for_list Source code
calculate_propcdf_median_for_list Source code
calculate_sample_max_prop Source code
calculate_valleys Source code
callMetrics Man page Source code
callMode Man page Source code
callPeakdist Man page Source code
callSize Man page Source code
callValleydist Man page Source code
check_dup_mode Source code
filter_insert_size Source code
get_full_sample_name Source code
get_group_path Source code
loop_read_insert_metrics_in_list Source code
plotAllToOne Man page Source code
plotMetrics Man page Source code
plotMode Man page Source code
plotModesummary Man page Source code
plotPeakdist Man page Source code
plotSinglegroup Man page Source code
plotValleydist Man page Source code
read_picard_insert_metrics Source code
hw538/cfDNAPro documentation built on Dec. 3, 2019, 8:04 p.m.