Files in hw538/cfDNAPro
cfDNAPro extracts and Visualises biological features from whole genome sequencing data of cell-free DNA
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/calMetrics.R
R/callCNV.R
R/callLength.R
R/callMode.R
R/callMotif.R
R/callPeakDistance.R
R/callSize.R
R/callValleyDistance.R
R/downsampleBam.R
R/examplePath.R
R/internalFunctions.R
R/plotAllToOne.R
R/plotCNV.R
R/plotLength.R
R/plotMetrics.R
R/plotMode.R
R/plotModeSummary.R
R/plotMotif.R
R/plotPeakDistance.R
R/plotSingleGroup.R
R/plotValleyDistance.R
R/readBam.R
R/readGALP.R
R/read_bam_insert_metrics.R
R/summarizeBam.R
R/themes.R
R/userLevelMinorFunctions.R
README.md
inst/extdata/groups_picard/cohort_1/sample0.txt
inst/extdata/groups_picard/cohort_1/sample1.txt
inst/extdata/groups_picard/cohort_1/sample2.txt
inst/extdata/groups_picard/cohort_1/sample4.txt
inst/extdata/groups_picard/cohort_1/sample5.txt
inst/extdata/groups_picard/cohort_2/sample6.txt
inst/extdata/groups_picard/cohort_2/sample7.txt
inst/extdata/groups_picard/cohort_2/sample8.txt
inst/extdata/groups_picard/cohort_3/sample10.txt
inst/extdata/groups_picard/cohort_3/sample11.txt
inst/extdata/groups_picard/cohort_3/sample12.txt
inst/extdata/groups_picard/cohort_3/sample13.txt
inst/extdata/groups_picard/cohort_3/sample14.txt
inst/extdata/groups_picard/cohort_3/sample9.txt
inst/extdata/groups_picard/cohort_4/sample15.txt
inst/extdata/groups_picard/cohort_4/sample16.txt
inst/extdata/groups_picard/cohort_4/sample17.txt
inst/extdata/groups_picard/cohort_4/sample18.txt
inst/extdata/step6/example/sample19.txt
inst/script/description_of_extdata.md
man/callCNV.Rd
man/callLength.Rd
man/callMetrics.Rd
man/callMode.Rd
man/callMotif.Rd
man/callPeakDistance.Rd
man/callSize.Rd
man/callValleyDistance.Rd
man/downsampleBam.Rd
man/examplePath.Rd
man/plotAllToOne.Rd
man/plotCNV.Rd
man/plotLength.Rd
man/plotMetrics.Rd
man/plotMode.Rd
man/plotModeSummary.Rd
man/plotMotif.Rd
man/plotPeakDistance.Rd
man/plotSingleGroup.Rd
man/plotValleyDistance.Rd
man/readBam.Rd
man/readGALP.Rd
man/read_bam_insert_metrics.Rd
man/summarizeBam.Rd
tests/testthat.R
tests/testthat/test_call_functions.R
tests/testthat/test_plot_functions.R
vignettes/cfDNAPro.Rmd
vignettes/logo.png
