get_metabolites_exchange_fluxes: Get metabolites exchange fluxes

Description Usage Arguments Value Examples

Description

Get metabolites exchange fluxes

Usage

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get_metabolites_exchange_fluxes(model, metabolites,
  exchange_met = build_exchange_met(model), backward_fluxes = "_b",
  forward_fluxes = "_f")

Arguments

model

An object of class modelOrg, the genome scale metabolic model

metabolites

A data.frame containing the names and concentrations of metabolites

exchange_met

A data.frame as build by the function build_exchange_met

backward_fluxes

Optional parameter for irreversible model to indicate backward fluxes

forward_fluxes

Optional parameter for irreversible model to indicate forward fluxes

Value

a data.frame containing the exchange metabolite model id and the equivalent name

Examples

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data("iMM904")
metabolites<-data.frame("name"=c("D-Glucose","Glycerol"),
                        "concentrations"=c(16,0))
get_metabolites_exchange_fluxes(iMM904,metabolites)

i3bionet/CoRegFlux documentation built on May 31, 2019, 1:50 a.m.