Description Usage Arguments Value Examples
Get metabolites exchange fluxes
1 2 3 | get_metabolites_exchange_fluxes(model, metabolites,
exchange_met = build_exchange_met(model), backward_fluxes = "_b",
forward_fluxes = "_f")
|
model |
An object of class modelOrg, the genome scale metabolic model |
metabolites |
A data.frame containing the names and concentrations of metabolites |
exchange_met |
A data.frame as build by the function build_exchange_met |
backward_fluxes |
Optional parameter for irreversible model to indicate backward fluxes |
forward_fluxes |
Optional parameter for irreversible model to indicate forward fluxes |
a data.frame containing the exchange metabolite model id and the equivalent name
1 2 3 4 | data("iMM904")
metabolites<-data.frame("name"=c("D-Glucose","Glycerol"),
"concentrations"=c(16,0))
get_metabolites_exchange_fluxes(iMM904,metabolites)
|
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