Files in ianjonsen/foieGras
Fit Continuous-Time State-Space and Latent Variable Models for Quality Control of Argos Satellite (and Other) Telemetry Data and for Estimating Changes in Animal Movement

.Rbuildignore
.github/.gitignore
.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md
.github/workflows/check-full.yaml
.github/workflows/pkgdown.yaml
.gitignore
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md R/aes_lst.R R/aniMotum-package.R R/fit_mpm.R R/fit_ssm.R R/fmap.R R/format_data.R R/grab.R R/join.R R/map.R R/map_multi_track_base.R R/map_multi_track_mp.R R/map_single_track_base.R R/map_single_track_mp.R R/mpfilter.R R/mpm_control.R R/mpmf.R R/osar.r R/pf_add_emf.R R/pf_dup_dates.R R/pf_obs_type.R R/pf_sda_filter.R R/pf_sf_project.R R/plot.mpm.R R/plot.osar.R R/plot.sim.R R/plot.sim_fit.R R/plot.sim_post.R R/plot.ssm.R R/prefilter.R R/print.ssm.R R/route_path.R R/roxygentags.R R/sfilter.R R/sim.R R/sim_filter.R R/sim_fit.R R/sim_post.R R/similarity_flag.R R/similarity_var.R R/ssm_control.R R/summary.ssm.R R/utils.R R/zzz.R README.Rmd README.md
_pkgdown.yml
aniMotum.Rproj
codecov.yml
data-raw/Jcrab35.csv
data-raw/Jcrab35.rds
data-raw/Jcrab35.zip
data-raw/SnowPetrelExample.csv
data-raw/chl.grd
data-raw/chl.grd.aux.xml
data-raw/chl.gri
data-raw/jcrab_test.R data-raw/jonah_crab.Rmd
data-raw/jonah_crab.html
data-raw/potential_fn_gradients.R data-raw/sim_filter_exs.Rmd
data-raw/sim_filter_exs.html
data-raw/snowpetrel.R
data/ellie.RData
data/sese.rda
data/sese2.RData
data/sese2_n.RData
data/wese_sb.RData
inst/CITATION
inst/TMB-version
inst/doc/Mapping.R inst/doc/Mapping.Rmd
inst/doc/Mapping.html
inst/doc/Move_persistence_models.R inst/doc/Move_persistence_models.Rmd
inst/doc/Move_persistence_models.html
inst/doc/Overview.R inst/doc/Overview.Rmd
inst/doc/Overview.html
inst/doc/Path_rerouting.R inst/doc/Path_rerouting.Rmd
inst/doc/Path_rerouting.html
inst/doc/SSM_fitting.R inst/doc/SSM_fitting.Rmd
inst/doc/SSM_fitting.html
inst/doc/SSM_validation.R inst/doc/SSM_validation.Rmd
inst/doc/SSM_validation.html
inst/doc/Track_simulation.R inst/doc/Track_simulation.Rmd
inst/doc/Track_simulation.html
inst/extdata/ellps_tab.rda
inst/extdata/grad.rda
inst/logo/create_logo.R
inst/logo/img/huwh.png
inst/logo/img/huwh2.png
inst/logo/img/kipe.png
inst/logo/img/kipe2.png
inst/logo/img/lbtu.png
inst/logo/img/lbtu2.png
inst/logo/img/madu.png
inst/logo/img/madu1.png
inst/logo/img/sese_female_orig.png
inst/logo/img/sese_male.png
inst/logo/img/sese_male_orig.png
inst/logo/img/whsh.png
inst/logo/img/whsh2.png
man/aes_lst.Rd man/aniMotum-package.Rd man/argos_lc.Rd man/dummy.Rd man/ellie.Rd man/ellp.par.Rd man/elps.Rd man/emf.Rd
man/figures/README-ex1-1.png
man/figures/README-example1-1.png
man/figures/README-explots1-1.png
man/figures/README-explots2-1.png
man/figures/README-install_1.png
man/figures/README-install_2.png
man/figures/README-install_3.png
man/figures/README-logo-1.png
man/figures/logo.png
man/fit_mpm.Rd man/fit_ssm.Rd man/fmap.Rd man/format_data.Rd man/grab.Rd man/join.Rd man/map.Rd man/map_multi_track_base.Rd man/map_multi_track_mp.Rd man/map_single_track_base.Rd man/map_single_track_mp.Rd man/mpfilter.Rd man/mpm_control.Rd man/mpmf.Rd man/osar.Rd man/pf_add_emf.Rd man/pf_dup_dates.Rd man/pf_obs_type.Rd man/pf_sda_filter.Rd man/pf_sf_project.Rd man/plot.mpm_df.Rd man/plot.osar.Rd man/plot.sim.Rd man/plot.sim_fit.Rd man/plot.sim_post.Rd man/plot.ssm_df.Rd man/prefilter.Rd man/print.ssm.Rd man/route_path.Rd man/rtnorm.Rd man/sda_int.Rd man/sese.Rd man/sese2.Rd man/sese2_n.Rd man/sfilter.Rd man/sim.Rd man/sim_filter.Rd man/sim_fit.Rd man/sim_post.Rd man/similarity_flag.Rd man/similarity_var.Rd man/speedfilter_int.Rd man/ssm_control.Rd man/summary.ssm_df.Rd man/wese_sb.Rd man/wrap_lon.Rd
misc/fit.rda
src/Makevars
src/Makevars.win
src/TMB/compile.R
src/TMB/sub/.Rapp.history
src/TMB/sub/crw.hpp
src/TMB/sub/joint_mpm.hpp
src/TMB/sub/mp.hpp
src/TMB/sub/mpm.hpp
src/TMB/sub/rw.hpp
src/aniMotum.cpp
tests/testthat.R tests/testthat/test-emf.R tests/testthat/test-fit_mpm.R tests/testthat/test-fit_ssm.R tests/testthat/test-grab.R tests/testthat/test-join.R tests/testthat/test-map.R tests/testthat/test-osar.R tests/testthat/test-plot_mpm.R tests/testthat/test-plot_sim.R tests/testthat/test-plot_sim_fit.R tests/testthat/test-plot_ssm.R tests/testthat/test-prefilter.R tests/testthat/test-sim_fit.R vignettes/Mapping.Rmd vignettes/Move_persistence_models.Rmd vignettes/Overview.Rmd vignettes/Path_rerouting.Rmd vignettes/SSM_fitting.Rmd vignettes/SSM_validation.Rmd vignettes/Track_simulation.Rmd
vignettes/data/overview/fit.rda
vignettes/data/ssm_fitting/fits_aic.rda
vignettes/data/ssm_validation/fits.rda
vignettes/data/track_simulation/simdat.rda
vignettes/images/mapping/map_1a.jpg
vignettes/images/mapping/map_1b.jpg
vignettes/images/mapping/map_2.jpg
vignettes/images/mapping/map_3.jpg
vignettes/images/mapping/map_4.jpg
vignettes/images/mapping/map_5.jpg
vignettes/images/mapping/map_6.jpg
vignettes/images/mapping/map_7.jpg
vignettes/images/move_persistence/fmp_map.jpg
vignettes/images/move_persistence/fmp_plot.jpg
vignettes/images/move_persistence/mp_map.jpg
vignettes/images/move_persistence/mp_plot.jpg
vignettes/images/overview/fit_plot1.jpg
vignettes/images/overview/fit_plot2.jpg
vignettes/images/path_rerouting/map_1ab.jpg
vignettes/images/path_rerouting/map_2ab.jpg
vignettes/images/ssm_fitting/histos.jpeg
vignettes/images/ssm_validation/fit_rw_f.jpeg
vignettes/images/ssm_validation/fit_rw_p.jpeg
vignettes/images/ssm_validation/fit_rw_track.jpeg
vignettes/images/ssm_validation/osar_crw_plots.jpg
vignettes/images/ssm_validation/osar_rw_plots.jpg
vignettes/images/track_simulation/plot_sim1.jpg
vignettes/images/track_simulation/plot_sim2.jpg
vignettes/images/track_simulation/st_1.jpg
vignettes/images/track_simulation/st_2.jpg
vignettes/images/track_simulation/st_3.jpg
vignettes/images/track_simulation/st_4ab.jpg
vignettes/images/track_simulation/st_5ab.jpg
vignettes/images/track_simulation/st_6ab.jpg
vignettes/images/track_simulation/st_7ab.jpg
vignettes/images/track_simulation/st_8.jpg
vignettes/images/track_simulation/st_9.jpg
ianjonsen/foieGras documentation built on Jan. 17, 2025, 11:15 p.m.