beta_dist: Taxonimic betadiversity among several communities
In ibartomeus/fundiv: tools to calculate several functional trait diversity indexes
Description
Usage
Arguments
Value
Examples
Description
Calculate taxonomic trait beta diversity among all pairwise communities using Carvalho et al. 2012 decomposition
and creates a dist object.
Usage
1
beta_dist(W)
Arguments
W
matrix containing the abundances of the species per site (or presence-absence,
i.e. 0 or 1). Rows are sites and species are columns. NA not tolerated.
Value
Btot Total Beta diversity dist object
B_3 Beta diversity due to replacement dist object
Brich Beta diversity due to richness diferences dist object
quality the ouptput will print the quality of the dendogram representation.
clustering performance is assessed by the correlation with the cophenetic distance
Examples
1
2
ex1 <- beta_dist(W = dummy$abun)
ex1
ibartomeus/fundiv documentation built on May 18, 2019, 1:29 a.m.
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Description Usage Arguments Value Examples
Description
Calculate taxonomic trait beta diversity among all pairwise communities using Carvalho et al. 2012 decomposition and creates a dist object.
Usage
1 | beta_dist(W)
|
Arguments
W |
matrix containing the abundances of the species per site (or presence-absence, i.e. 0 or 1). Rows are sites and species are columns. NA not tolerated. |
Value
Btot Total Beta diversity dist object
B_3 Beta diversity due to replacement dist object
Brich Beta diversity due to richness diferences dist object
quality the ouptput will print the quality of the dendogram representation. clustering performance is assessed by the correlation with the cophenetic distance
Examples
1 2 | ex1 <- beta_dist(W = dummy$abun)
ex1
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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