normalizeMatrix: Normalize interaction matrix using normalization vector.
In ibn-salem/chromint: Analysis of Chromatin Interactions
Description
Usage
Arguments
Value
Description
Given the raw contact matrix M \in R^{nxn} and normalization vecotor v \in
R^{n}, the normalized counts M^{*}_{i,j} = M_{i,j} / (v_{i} * v_{j}) or
written as matrix product M^{*} = diag(v^{-1}) * M * diag(v^{-1}).
Usage
1
normalizeMatrix(M, v)
Arguments
M
a numeric Matrix with size n*n.
v
a numeric vector of size n.
Value
A Matrix with normalized counts.
ibn-salem/chromint documentation built on May 18, 2019, 1:29 a.m.
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Description Usage Arguments Value
Description
Given the raw contact matrix M \in R^{nxn} and normalization vecotor v \in R^{n}, the normalized counts M^{*}_{i,j} = M_{i,j} / (v_{i} * v_{j}) or written as matrix product M^{*} = diag(v^{-1}) * M * diag(v^{-1}).
Usage
1 | normalizeMatrix(M, v)
|
Arguments
M |
a numeric |
v |
a numeric vector of size n. |
Value
A Matrix with normalized counts.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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