parseCaptureHiC: Parse Capture Hi-C data as 'GInteractions' object.
In ibn-salem/chromint: Analysis of Chromatin Interactions
Description
Usage
Arguments
Value
Description
In the paper Mifsud et al. 2015
(https://www.ncbi.nlm.nih.gov/pubmed/25938943) promoter caputure Hi-C
data is provied for two cell types. This data can be downloaded from the
supplemental material of the studay as .zip archive:
http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-2323/E-MTAB-2323.additional.1.zip.
Each file in this zip archive can be parsed separately with this function as
an GInteractions object.
Usage
1
parseCaptureHiC(infile, seqInfo = NULL)
Arguments
infile
Input file with interactions.
seqInfo
A seqinfo object holding the length of each chromosome.
Value
A GInteractions object
ibn-salem/chromint documentation built on May 18, 2019, 1:29 a.m.
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Description Usage Arguments Value
Description
In the paper Mifsud et al. 2015
(https://www.ncbi.nlm.nih.gov/pubmed/25938943) promoter caputure Hi-C
data is provied for two cell types. This data can be downloaded from the
supplemental material of the studay as .zip archive:
http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-2323/E-MTAB-2323.additional.1.zip.
Each file in this zip archive can be parsed separately with this function as
an GInteractions object.
Usage
1 | parseCaptureHiC(infile, seqInfo = NULL)
|
Arguments
infile |
Input file with interactions. |
seqInfo |
A seqinfo object holding the length of each chromosome. |
Value
A GInteractions object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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