Description Usage Arguments Value
In the paper Mifsud et al. 2015
(https://www.ncbi.nlm.nih.gov/pubmed/25938943) promoter caputure Hi-C
data is provied for two cell types. This data can be downloaded from the
supplemental material of the studay as .zip archive:
http://www.ebi.ac.uk/arrayexpress/files/E-MTAB-2323/E-MTAB-2323.additional.1.zip.
Each file in this zip archive can be parsed separately with this function as
an GInteractions
object.
1 | parseCaptureHiC(infile, seqInfo = NULL)
|
infile |
Input file with interactions. |
seqInfo |
A seqinfo object holding the length of each chromosome. |
A GInteractions
object
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