IntegrationData-class: The IntegrationData Class
In ibseq/scs-analysis: Tools for Single Cell Genomics
Description
The IntegrationData object is an intermediate storage container used internally throughout the
integration procedure to hold bits of data that are useful downstream.
Slots
neighborsList of neighborhood information for cells (outputs of RANN::nn2)
weightsAnchor weight matrix
integration.matrixIntegration matrix
anchorsAnchor matrix
offsetsThe offsets used to enable cell look up in downstream functions
objects.ncellNumber of cells in each object in the object.list
sample.treeSample tree used for ordering multi-dataset integration
ibseq/scs-analysis documentation built on Feb. 27, 2021, 12:35 a.m.
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Description
The IntegrationData object is an intermediate storage container used internally throughout the integration procedure to hold bits of data that are useful downstream.
Slots
neighborsList of neighborhood information for cells (outputs of
RANN::nn2)weightsAnchor weight matrix
integration.matrixIntegration matrix
anchorsAnchor matrix
offsetsThe offsets used to enable cell look up in downstream functions
objects.ncellNumber of cells in each object in the object.list
sample.treeSample tree used for ordering multi-dataset integration
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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