LoadSTARmap: Load STARmap data
In ibseq/scs-analysis: Tools for Single Cell Genomics

Description Usage Arguments Value See Also

Load STARmap data

LoadSTARmap(
  data.dir,
  counts.file = "cell_barcode_count.csv",
  gene.file = "genes.csv",
  qhull.file = "qhulls.tsv",
  centroid.file = "centroids.tsv",
  assay = "Spatial",
  image = "image"
)

`data.dir`	location of data directory that contains the counts matrix, gene name, qhull, and centroid files.
`counts.file`	name of file containing the counts matrix (csv)
`gene.file`	name of file containing the gene names (csv)
`qhull.file`	name of file containing the hull coordinates (tsv)
`centroid.file`	name of file containing the centroid positions (tsv)
`assay`	Name of assay to associate spatial data to
`image`	Name of "image" object storing spatial coordinates