Description Usage Arguments Value
Density plots to visualize perturbation scores calculated from RunMixscape function.
1 2 3 4 5 6 7 | PlotPerturbScore(
object,
target.gene.ident = NULL,
group.by = "mixscape_class",
col = "orange2",
prtb.type = "KO"
)
|
object |
An object of class Seurat. |
target.gene.ident |
Class identity for cells sharing the same perturbation. Name should be the same as the one used to run mixscape. |
group.by |
Option to split densities based on mixscape classification. Default is set to NULL and plots cells by original class ID. |
col |
Specify color of target gene class or knockout cell class. For control non-targeting and non-perturbed cells, colors are set to different shades of grey. |
prtb.type |
specify type of CRISPR perturbation expected for labeling mixscape classifications. Default is KO. |
A ggplot object.
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