Read10X_h5: Read 10X hdf5 file
In ibseq/scs-analysis: Tools for Single Cell Genomics
Description
Usage
Arguments
Value
View source: R/preprocessing.R
Description
Read count matrix from 10X CellRanger hdf5 file.
This can be used to read both scATAC-seq and scRNA-seq matrices.
Usage
1
Read10X_h5(filename, use.names = TRUE, unique.features = TRUE)
Arguments
filename
Path to h5 file
use.names
Label row names with feature names rather than ID numbers.
unique.features
Make feature names unique (default TRUE)
Value
Returns a sparse matrix with rows and columns labeled. If multiple
genomes are present, returns a list of sparse matrices (one per genome).
ibseq/scs-analysis documentation built on Feb. 27, 2021, 12:35 a.m.
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Description Usage Arguments Value
View source: R/preprocessing.R
Description
Read count matrix from 10X CellRanger hdf5 file. This can be used to read both scATAC-seq and scRNA-seq matrices.
Usage
1 | Read10X_h5(filename, use.names = TRUE, unique.features = TRUE)
|
Arguments
filename |
Path to h5 file |
use.names |
Label row names with feature names rather than ID numbers. |
unique.features |
Make feature names unique (default TRUE) |
Value
Returns a sparse matrix with rows and columns labeled. If multiple genomes are present, returns a list of sparse matrices (one per genome).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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