API for iferres/pewit
Microbial Pan-Genomics in R
| Global functions | |
|---|---|
| PewitR6 | Man page |
| clust_orgs | Source code |
| clusterOrphans | Source code |
| compute_kmers | Source code |
| compute_minhash | Source code |
| detect_OGs | Source code |
| determineOverlap | Source code |
| dist_jaccard | Source code |
| domainSearch | Source code |
| extractGffTable | Source code |
| extractSeqsFromGff3 | Source code |
| fast_clust | Source code |
| grouping | Source code |
| intersect2 | Source code |
| jaccard_dissimilarity | Source code |
| jaccard_similarity | Source code |
| lsh_candidates | Source code |
| minhash_clust_k4 | Source code |
| minhash_dist | Source code |
| outhmmsearch | Source code |
| outphmmer | Source code |
| pangenome | Man page Source code |
| processHmmsearch | Source code |
| processPfam_A_Dat | Source code |
| rm_overlaping_clans | Source code |
| runHmmsearch | Source code |
| runMCL | Source code |
| splitAndWriteFastas | Source code |
| splitCluster | Source code |
| splitPreClusters | Source code |
