Files in iferres/phylen
Search Core Genes Using HMMs, Compute Multiple Alignment, Concatenate And Compute Phylogeny
.Rbuildignore
.gitignore
.travis.yml
CODE_OF_CONDUCT.md
CONTRIBUTING.md
DESCRIPTION
LICENSE
NAMESPACE
R/computePhylo.R
R/coreAlign.R
R/eggnog_interface.R
R/gff3_Handling.R
R/hmmer.R
R/utils.R
README.md
figure1.png
inst/extdata/toydata.tar.gz
inst/testdata/SeqFastadna.rds
inst/testdata/ali.tar.gz
inst/testdata/example_domtblout.tar.gz
inst/testdata/gene_SeqFastaAA.rds
inst/testdata/gene_SeqFastadna.rds
inst/testdata/gff_table_df.rds
inst/testdata/hmmstat.tar.gz
inst/testdata/test.tar.gz
man/catHoriz.Rd
man/catVert.Rd
man/comp.Rd
man/computePhylo.Rd
man/download_nog_hmm.Rd
man/extractGffTable.Rd
man/extractSeqsFromGff3.Rd
man/getFfnFaa.Rd
man/getIdsFromStats.Rd
man/hmmPress.Rd
man/hmmSearch.Rd
man/hmmStat.Rd
man/list_eggnogdb.Rd
man/mafft.Rd
man/phylen.Rd
man/readDomtblout.Rd
man/setHMM.Rd
man/translate.Rd
man/untargz.Rd
paper.bib
paper.md
phylen.Rproj
tests/testthat.R
tests/testthat/test_gff3.R
tests/testthat/test_hmmer.R
tests/testthat/test_phylo.R
tests/testthat/test_utils.R
vignettes/readme_img1.png
