catHoriz: Concatenate The Coregenes
In iferres/phylen: Search Core Genes Using HMMs, Compute Multiple Alignment, Concatenate And Compute Phylogeny
Description
Usage
Arguments
Value
Author(s)
Description
Concatenate the core genes and produce one file per genome with
the supergene in fasta format.
Usage
1
catHoriz(rn, ogsDirNam, afi, extension = "_supergene.fasta", n_threads = 1L)
Arguments
rn
The isolates names.
ogsDirNam
Where to put the files.
afi
A character() vector with the paths to the orthologous
alignments.
extension
An extension.
n_threads
The number of cpus to use.
Value
The alignment files and the names of those files in the R stout.
Author(s)
Ignacio Ferres
iferres/phylen documentation built on May 24, 2019, 2:04 a.m.
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Description Usage Arguments Value Author(s)
Description
Concatenate the core genes and produce one file per genome with the supergene in fasta format.
Usage
1 | catHoriz(rn, ogsDirNam, afi, extension = "_supergene.fasta", n_threads = 1L)
|
Arguments
rn |
The isolates names. |
ogsDirNam |
Where to put the files. |
afi |
A |
extension |
An extension. |
n_threads |
The number of cpus to use. |
Value
The alignment files and the names of those files in the R stout.
Author(s)
Ignacio Ferres
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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