Files in im3sanger/dndscv
Poisson-based dN/dS models to quantify natural selection in somatic evolution
DESCRIPTION
LICENSE.txt
NAMESPACE
R/buildcodon.R
R/buildref.R
R/codondnds.R
R/dndscv-package.R
R/dndscv.R
R/fitlnpbin.R
R/geneci.R
R/genesetdnds.R
R/sitednds.R
R/withingenednds.R
README.md
data/cancergenes_cgc81.rda
data/covariates_hg19.rda
data/covariates_hg19_chrx.rda
data/covariates_hg19_hg38_epigenome_pcawg.rda
data/dataset_normaloesophagus.rda
data/dataset_normalskin.rda
data/dataset_normalskin_genes.rda
data/dataset_simbreast.rda
data/dataset_tcgablca.rda
data/knownhotcodons_hg19.rda
data/knownhotspots_hg19.rda
data/refcds_GRCh38_hg38.rda
data/refcds_hg19.rda
data/submod_12r_3w.rda
data/submod_192r_3w.rda
data/submod_2r_3w.rda
dndscv.Rproj
inst/doc/dNdScv.Rmd
inst/doc/dNdScv.html
inst/extdata/BioMart_human_GRCh37_chr3_segment.txt
inst/extdata/chr3_segment.fa
inst/extdata/chr3_segment.fa.fai
inst/extdata/refcds_example_chr3_segment.rda
man/buildcodon.Rd
man/buildref.Rd
man/codondnds.Rd
man/dndscv-package.Rd
man/dndscv.Rd
man/fitlnpbin.Rd
man/geneci.Rd
man/genesetdnds.Rd
man/sitednds.Rd
man/withingenednds.Rd
vignettes/Ensembl_BioMart_screenshot1.png
vignettes/Ensembl_BioMart_screenshot2.png
vignettes/buildref.Rmd
vignettes/buildref.html
vignettes/dNdScv.Rmd
vignettes/dNdScv.html
vignettes/example_output_refcds.rda
vignettes/sitednds.Rmd
vignettes/sitednds.html
