Man pages for intermine/intermineR
R Interface with InterMine-Powered Databases
| convertToGeneAnswers | Convert InterMineR enrichment analysis results to GeneAnswers... |
| convertToGRanges | Convert InterMineR retrieved genomic information to objects... |
| convertToRangedSummarizedExperiment | Convert experimental results retrieved by InterMineR queries... |
| doEnrichment | Perform enrichment analysis |
| getDatasets | Retrieve information about the available datasets of a Mine... |
| getGeneIds | Get Gene.id values for a list of gene identifiers |
| getModel | Get the model of InterMine |
| getRelease | Get the current release information of InterMine |
| getTemplateQuery | Get the query contained in a template |
| getTemplates | Get the information (name and title) of the templates... |
| getVersion | Get the version information of InterMine |
| getWidgets | Get the widgets of InterMine |
| initInterMine | Initialize the list containing the base URL and API token. |
| InterMineR-class | InterMineR class contains the input values for performing... |
| InterMineR-methods | Methods for accessing 'InterMineR-class' objects. |
| InterMineR-package | R Interface with InterMine-powered databases |
| listDatasets | Retrieve all types of InterMine features that possess... |
| list_manager | A Class for Managing List Content and Operations |
| ListManager-class | ListManager class provides methods to manage list contents... |
| ListManager-methods | Methods for managing and doing operations with... |
| listMines | List the available InterMine-powered databases |
| newQuery | Initialize a new list query |
| PL_DiabetesGenes | PL_DiabetesGenes data |
| PL_FlyTF_site_specific_TFs | PL_FlyTF_site_specific_TFs data |
| runQuery | Run InterMineR queries |
| setConstraints | setConstraints function is used to create a new or modify an... |
| setQuery | Initialize a new InterMineR query or modify an existing list... |
| simplifyResult | Convert multiple values of a column into Comma-separated... |
| summary | Summarize InterMineR query constraints |
| webservice-class | Service class represents connections to different InterMine... |
