summary: Summarize InterMineR query constraints

In intermine/intermineR: R Interface with InterMine-Powered Databases

Description

Summarize the information about the constraints contained by an object of the class InterMineR.

Usage

summary(object,...)

Arguments

object	an object of the class InterMineR.
...	additional arguments affecting the summary produced.

Value

a data.frame containing the constraints of the InterMineR object as rows. Each constraint is constituted by a path, an operator and one or more values. Multiple values are returned as a comma-separated character string.

Author(s)

InterMine Team

See Also

InterMineR-class, setQuery

Examples

# get FlyMine instance
im.fly = initInterMine(listMines()["FlyMine"])

# get GO_Gene template query
qGO_Gene = getTemplateQuery(im.fly, "GO_Gene")

# modify GO_Gene template query to have more than one GO values
go.constraints = setConstraints(
  values = list(c("DNA repair", "cellular response to DNA damage stimulus")),
  modifyQueryConstraints = qGO_Gene,
  m.index = 3
)

# create 'InterMineR' object
go.query = setQuery(
  inheritQuery = qGO_Gene,
  where = go.constraints
)

# get InterMineR constraint summary
summary(go.query)

intermine/intermineR documentation built on Jan. 10, 2022, 4:24 p.m.