InterMineR-methods: Methods for accessing 'InterMineR-class' objects.

In intermine/intermineR: R Interface with InterMine-Powered Databases

Description

InterMineR constitutes a class used to store the information which are required for performing a query for biological data in an InterMine instance. The methods for accessing the slots of an InterMineR-class object are presented here.

Methods

Class-specific methods:

getName(InterMineR-class):

Access the name slot of InterMineR-class object.

getDescription(InterMineR-class):

Access the description slot of InterMineR-class object.

getSelect(InterMineR-class):

Access the select slot of InterMineR-class object.

getOrderBy(InterMineR-class):

Access the orderBy slot of InterMineR-class object.

getWhere(InterMineR-class):

Access the where slot of InterMineR-class object.

Author(s)

InterMine Team

See Also

setConstraints, setQuery, InterMineR-class

Examples

# get mine instance
im.fly = initInterMine(listMines()["FlyMine"])

# get GO_Gene template query
qGO_Gene = getTemplateQuery(im.fly, "GO_Gene")

# create 'InterMineR' object
go.query = setQuery(
  inheritQuery = qGO_Gene
)

class(go.query)

# access name:
getName(go.query)

# access description:
getDescription(go.query)

# access select:
getSelect(go.query)

# access orderBy:
getOrderBy(go.query)

# access where:
getWhere(go.query)

intermine/intermineR documentation built on Jan. 10, 2022, 4:24 p.m.