computeRDAR2: Compute signification of RDA test

In isglobal-brge/MEAL: Perform methylation analysis and facilitates differential expression analyses

Description

Compare R2 obtained in our region of interest with the global R^2 and the R^2 of regions with the same number of probes.

Usage

computeRDAR2(
  fullMat,
  varsmodel,
  covarsmodel = NULL,
  featNum,
  R2,
  num_permutations = 1e+05 - 1
)

Arguments

fullMat	Matrix with the whole genome expression or methylation values
varsmodel	Matrix with the model
covarsmodel	Matrix with the covariables model
featNum	Numeric with the number of features of the RDA model
R2	Numeric with the R2 of the RDA model
num_permutations	Numeric with the number of permutations.

Value

Numeric vector with the probability of finding a region with the same number of probes with a bigger R2 and the global R2.

isglobal-brge/MEAL documentation built on May 8, 2021, 8:05 p.m.