runDMRcate: Run DMRcate

In isglobal-brge/MEAL: Perform methylation analysis and facilitates differential expression analyses

Description

Run DMRcate

Usage

runDMRcate(set, model, coefficient = 2, resultSet = FALSE, ...)

Arguments

set	GenomicRatioSet, eSet derived object or SummarizedExperiment
model	Model matrix or formula to get model matrix from set.
coefficient	Numeric with the column of model matrix used in the analysis. (Default: 2)
resultSet	Should results be encapsulated in a resultSet? (Default: TRUE)
...	Further arguments passed to cpg.annotate or dmrcate.

Details

This function has been deprecated and will be defunct in the new version.

Value

data.frame or resultSet with the result of bumphunter

See Also

dmrcate, cpg.annotate

isglobal-brge/MEAL documentation built on May 8, 2021, 8:05 p.m.